| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10005936m |
| Family | GH28 |
| Protein Properties | Length: 477 Molecular Weight: 52416 Isoelectric Point: 5.0169 |
| Chromosome | Chromosome/Scaffold: 19 Start: 1996209 End: 1998048 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 73 | 398 | 0 |
| SSICRVTFPPGTYLTAKLHLRSGVLLDVTENAVLLGGPRIEDYPAESSSDWYVVVANNATDVGITGGGAIDGQGSKFVVRFDEKKNVMVSWNQTGACLGD ECRPRLVGFVDCRNVEIWNITLREPAYWCLHIVRCENTSVHDVTILGEFNTPNNDGIDIEDSNNTVITRCHIDTGDDAICPKTYTAPLYNLTATDCWIRT KSSAIKLGSASWFDFKGLVFDNITIFESHRGLGMQIRDGGNVSDITFSNINISTRYYDPSWWGRAEPIYITTCPRDSSSKEGSVSNLLFVNITIDSENGV FLSGSPNGLLSDIKFKNMNLTLRRWS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 477 Download |
| MGFPLLMRSI SLILLLFLFQ SRSYTSSPNI KLPGDSLSLS VTDFGATGDG IHYDSSAIQS 60 AIDACNRHYT SSSSICRVTF PPGTYLTAKL HLRSGVLLDV TENAVLLGGP RIEDYPAESS 120 SDWYVVVANN ATDVGITGGG AIDGQGSKFV VRFDEKKNVM VSWNQTGACL GDECRPRLVG 180 FVDCRNVEIW NITLREPAYW CLHIVRCENT SVHDVTILGE FNTPNNDGID IEDSNNTVIT 240 RCHIDTGDDA ICPKTYTAPL YNLTATDCWI RTKSSAIKLG SASWFDFKGL VFDNITIFES 300 HRGLGMQIRD GGNVSDITFS NINISTRYYD PSWWGRAEPI YITTCPRDSS SKEGSVSNLL 360 FVNITIDSEN GVFLSGSPNG LLSDIKFKNM NLTLRRWSNY SAGLVDYRPG CQGLVNHSAT 420 AGIIMEHVKG FSVENVDLKW TDDNLNAWNV PLEFRPSTVN NVSFVGFNSG LLHEIV* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 3.0e-8 | 176 | 251 | 76 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 2.0e-8 | 38 | 406 | 402 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 7.0e-9 | 36 | 268 | 241 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-11 | 176 | 393 | 233 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-42 | 39 | 322 | 317 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB41176.1 | 0 | 20 | 475 | 16 | 474 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_567055.1 | 0 | 20 | 475 | 16 | 474 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002282920.1 | 0 | 10 | 470 | 8 | 465 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002282925.1 | 0 | 10 | 470 | 8 | 460 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
| RefSeq | XP_002322693.1 | 0 | 30 | 475 | 3 | 445 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2e-17 | 38 | 319 | 27 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2e-17 | 38 | 319 | 27 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2e-17 | 38 | 319 | 27 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2e-17 | 38 | 319 | 27 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 5e-17 | 39 | 321 | 157 | 484 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
