| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10005939m |
| Family | GH28 |
| Protein Properties | Length: 476 Molecular Weight: 51661.8 Isoelectric Point: 6.3714 |
| Chromosome | Chromosome/Scaffold: 19 Start: 715310 End: 717606 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 76 | 425 | 0 |
| ASDGGAQLFVPAGKWLTGSFNLTSHFTLFLHKDAILLAAQDINEYPILKALPSYGRGRDAAGGRFASLLFGTNLSDVVITGNNGTIDGQGSFWWQKFHGG KLKYTRPYLIELMFSDTIQISNLTLLDSPSWNIHPVYSSNIIVKGVTIIAPVKSPNTDGINPDSCTNTRIEDCYIISGDDCIAVKSGWDEYGIAFGMPTK HLLIRRLTCISPYSAAIALGSEMSGGIEDVRAEEITAYQTESGVRIKTAVGRGAFVKNIYVRGMSLHTMKWVFWMTGNYKAHADSHYDPHALPEITGINY RDIVAENVSMAGRLEGISGDPFTGICISNATISMAAKHKKAIWMCSDVEG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 476 Download |
| MKNILASIVV TIITLSIVID NAQGKRVLQS FEAFEYTAIT CRSHSASITE FGGVGDGKTL 60 NTKAFQSAVD HLSQYASDGG AQLFVPAGKW LTGSFNLTSH FTLFLHKDAI LLAAQDINEY 120 PILKALPSYG RGRDAAGGRF ASLLFGTNLS DVVITGNNGT IDGQGSFWWQ KFHGGKLKYT 180 RPYLIELMFS DTIQISNLTL LDSPSWNIHP VYSSNIIVKG VTIIAPVKSP NTDGINPDSC 240 TNTRIEDCYI ISGDDCIAVK SGWDEYGIAF GMPTKHLLIR RLTCISPYSA AIALGSEMSG 300 GIEDVRAEEI TAYQTESGVR IKTAVGRGAF VKNIYVRGMS LHTMKWVFWM TGNYKAHADS 360 HYDPHALPEI TGINYRDIVA ENVSMAGRLE GISGDPFTGI CISNATISMA AKHKKAIWMC 420 SDVEGVTSGV DPKPCDLLDG QQSEKKKKTD GGCDFPTDVL DIDNVELKSC SYQMN* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 2.0e-20 | 47 | 431 | 405 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-23 | 45 | 407 | 369 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-26 | 146 | 423 | 284 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 1.0e-26 | 43 | 345 | 312 | + Probable polygalacturonase At3g15720 | ||
| COG5434 | PGU1 | 5.0e-51 | 46 | 348 | 327 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| Swiss-Prot | A7PZL3 | 0 | 31 | 475 | 48 | 488 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
| GenBank | AAP33475.1 | 0 | 31 | 475 | 33 | 473 | polygalacturonase-like protein [Fragaria x ananassa] |
| RefSeq | NP_191708.1 | 0 | 1 | 475 | 1 | 476 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002277736.1 | 0 | 31 | 475 | 36 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301370.1 | 0 | 26 | 475 | 23 | 468 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 3.00018e-42 | 44 | 410 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 3.00018e-42 | 44 | 410 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 3.00018e-42 | 44 | 410 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 3.00018e-42 | 44 | 410 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 8e-17 | 40 | 385 | 151 | 529 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
