| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10005958m |
| Family | GH28 |
| Protein Properties | Length: 464 Molecular Weight: 51036.7 Isoelectric Point: 6.2895 |
| Chromosome | Chromosome/Scaffold: 19 Start: 452395 End: 455514 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 73 | 414 | 0 |
| SDKGGAKLFVPAGQWLTGSFDLISHLTLWLDKGATILGSTSSENWPVVDPLPSYGRGRELPGRRHRSLIYGQNLTDVVITGENGTIDGQGSIWWDWFRNG ELNYTRPHLVELMNSTGLVISNLTFLNSPFWNIHPVYCRDVVVKNLTILAPLESPNTDGVDPEDCYIVTGDDLVSIKSGWDEYGISYARPSSKIKINRLS GQTSSSSGIAIGSEMSGGVSEIYIKDLHLFNSNTGIRIKTSPGRGGYVRNVHISNVKLDNVQKGIRFTGTYGEHPDEKFDPIALPVIEKITIENVNGEDI GVAGLLEGIEGDVFKNICFLNVTLTVKKNSKRSPWKCSNVRG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 464 Download |
| MKRSFLLLYV LLVQALYGAW CCVGGSLHCE YSNSASLHRP HSVSITEFGA VGDGVTLNTK 60 AFQNALFYLN SFSDKGGAKL FVPAGQWLTG SFDLISHLTL WLDKGATILG STSSENWPVV 120 DPLPSYGRGR ELPGRRHRSL IYGQNLTDVV ITGENGTIDG QGSIWWDWFR NGELNYTRPH 180 LVELMNSTGL VISNLTFLNS PFWNIHPVYC RDVVVKNLTI LAPLESPNTD GVDPEDCYIV 240 TGDDLVSIKS GWDEYGISYA RPSSKIKINR LSGQTSSSSG IAIGSEMSGG VSEIYIKDLH 300 LFNSNTGIRI KTSPGRGGYV RNVHISNVKL DNVQKGIRFT GTYGEHPDEK FDPIALPVIE 360 KITIENVNGE DIGVAGLLEG IEGDVFKNIC FLNVTLTVKK NSKRSPWKCS NVRGYSQWVS 420 PEIACDSFKE SIFPEHSSDC FGLSENKLEE SSGFSKSPWL LSW* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 7.0e-24 | 24 | 413 | 424 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 5.0e-25 | 32 | 337 | 322 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 2.0e-27 | 41 | 437 | 426 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-31 | 141 | 412 | 290 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 2.0e-55 | 43 | 334 | 325 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB71871.1 | 0 | 1 | 463 | 1 | 470 | putative protein [Arabidopsis thaliana] |
| EMBL | CBI37055.1 | 0 | 22 | 463 | 23 | 466 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_567126.1 | 0 | 1 | 463 | 1 | 471 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002301554.1 | 0 | 1 | 441 | 1 | 444 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002535132.1 | 0 | 23 | 463 | 34 | 476 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 8e-40 | 41 | 391 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 8e-40 | 41 | 391 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 8e-40 | 41 | 391 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 8e-40 | 41 | 391 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 1e-20 | 87 | 412 | 52 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
