| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10005982m |
| Family | GH28 |
| Protein Properties | Length: 441 Molecular Weight: 47627.5 Isoelectric Point: 7.6512 |
| Chromosome | Chromosome/Scaffold: 19 Start: 2129936 End: 2132539 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 94 | 422 | 0 |
| KKACSTNGVSKFLVPKGKTYLLKSTRFRGPCKSLRNFQILGTLSASTKRSDYKNDKNHWLILEDVNNLSIDGGSTGIIEGNGKIWWQNSCKIDKSKPCTK APTALTLYNLKKLNVKNLRVKNAQQIQISIEKCNNVKVKNVAITAPDDSPNTDGIHITNTQNIQISNSEIGTGDDCISIEDGSQNVQINDLTCGPGHGIS IGSLGDDNSKAYVSGINVDGAKLSSTDNGVRIKTYQGGSGTAKNIQFQNIRMENVKNPIIIDQNYCDKEKCEQQESAVQVSNVVYRNISGTSATDVAITF NCSEKYPCKGIVLENVNIKGGTASCKNAN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 441 Download |
| MARCSELLAI CLCILLMLSW CEALSSNVDD GYGHEDGSFE SDSLLKLNKN DDVLTLISSD 60 DNTTSASSTV SVSDFGAKGD GKTDDTQAFK KAWKKACSTN GVSKFLVPKG KTYLLKSTRF 120 RGPCKSLRNF QILGTLSAST KRSDYKNDKN HWLILEDVNN LSIDGGSTGI IEGNGKIWWQ 180 NSCKIDKSKP CTKAPTALTL YNLKKLNVKN LRVKNAQQIQ ISIEKCNNVK VKNVAITAPD 240 DSPNTDGIHI TNTQNIQISN SEIGTGDDCI SIEDGSQNVQ INDLTCGPGH GISIGSLGDD 300 NSKAYVSGIN VDGAKLSSTD NGVRIKTYQG GSGTAKNIQF QNIRMENVKN PIIIDQNYCD 360 KEKCEQQESA VQVSNVVYRN ISGTSATDVA ITFNCSEKYP CKGIVLENVN IKGGTASCKN 420 ANVQDQGTVS PRCSSNYFLM * 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 1.0e-85 | 75 | 435 | 366 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 3.0e-97 | 75 | 432 | 368 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-107 | 97 | 423 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 6.0e-119 | 75 | 431 | 365 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 0 | 1 | 434 | 435 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA65072.1 | 0 | 1 | 433 | 1 | 432 | polygalacturonase [Brassica napus] |
| EMBL | CAA90272.1 | 0 | 1 | 433 | 1 | 432 | Polygalacturonase [Brassica napus] |
| EMBL | CAC05657.1 | 0 | 1 | 435 | 1 | 433 | endopolygalacturonase [Brassica napus] |
| EMBL | CAD21651.2 | 0 | 1 | 433 | 1 | 432 | endo polygalacturonase [Brassica rapa subsp. rapa] |
| RefSeq | NP_191310.1 | 0 | 1 | 434 | 1 | 431 | ADPG1; polygalacturonase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1hg8_A | 9e-23 | 105 | 418 | 26 | 340 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 2iq7_G | 1e-22 | 83 | 423 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 1e-22 | 83 | 423 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 1e-22 | 83 | 423 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 1e-22 | 83 | 423 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
