| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10006416m |
| Family | GH28 |
| Protein Properties | Length: 389 Molecular Weight: 41364.2 Isoelectric Point: 9.2151 |
| Chromosome | Chromosome/Scaffold: 19 Start: 1289314 End: 1291694 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 47 | 374 | 0 |
| AKACASVKPVTILIPKGRFLLRSIVFDGAKCKRKSVTFRIKGTLVAPSDYRVLGKENYWIFFQHLDSLSVYGGVLDAQGASLWSCKKSGKHCPSGATSIG FQSSSNVVISGLTSLNSQMFHVVINGCRNVNIQGVKVSADGNSPNTDGIHVQSSSTVSILNSKISTGDDCVSVGPGTNGLWIENVACGPGHGISIGSLGK ESVEAGVQNVTVKTATFTGTENGVRIKSWARPSNGFAKNIRFQHCVMNNVQNPIVIDQNYCPGNENCPNQVSGIKISDVIFFDIHGTSAREVGVKFDCSS KKPCTGIRIQDVKLTYQNKPAVVDCSHA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 389 Download |
| MPSSLLIILL FLLSISLSSA QTYNILSYGA KPDGKTDSTK ALTVMWAKAC ASVKPVTILI 60 PKGRFLLRSI VFDGAKCKRK SVTFRIKGTL VAPSDYRVLG KENYWIFFQH LDSLSVYGGV 120 LDAQGASLWS CKKSGKHCPS GATSIGFQSS SNVVISGLTS LNSQMFHVVI NGCRNVNIQG 180 VKVSADGNSP NTDGIHVQSS STVSILNSKI STGDDCVSVG PGTNGLWIEN VACGPGHGIS 240 IGSLGKESVE AGVQNVTVKT ATFTGTENGV RIKSWARPSN GFAKNIRFQH CVMNNVQNPI 300 VIDQNYCPGN ENCPNQVSGI KISDVIFFDI HGTSAREVGV KFDCSSKKPC TGIRIQDVKL 360 TYQNKPAVVD CSHAGGTETG FQRSNSCL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 6.0e-85 | 22 | 380 | 369 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 5.0e-88 | 28 | 388 | 369 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 8.0e-89 | 50 | 367 | 321 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-103 | 22 | 387 | 372 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 3.0e-138 | 23 | 388 | 367 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK28534.1 | 0 | 3 | 388 | 2 | 384 | unknown [Arabidopsis thaliana] |
| EMBL | CAB75804.1 | 0 | 20 | 388 | 20 | 383 | polygalacturonase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_181915.1 | 0 | 3 | 388 | 2 | 384 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | NP_191544.2 | 0 | 20 | 388 | 20 | 388 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002529090.1 | 0 | 4 | 388 | 10 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-19 | 116 | 361 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1czf_B | 9e-18 | 12 | 371 | 7 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1czf_A | 9e-18 | 12 | 371 | 7 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1ib4_B | 0.00000000000002 | 148 | 333 | 110 | 294 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1ib4_A | 0.00000000000002 | 148 | 333 | 110 | 294 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
