PlantCAZyme

Basic Information
Species	Thellungiella halophila
Cazyme ID	Thhalv10006482m
Family	GH17
Protein Properties	Length: 360 Molecular Weight: 40239.9 Isoelectric Point: 10.1231
Chromosome	Chromosome/Scaffold: 19 Start: 583806 End: 585110
Description	Glycosyl hydrolase family 17 protein
View CDS

External Links
CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
GH17	38	354	0
IGINYGRYGSNLPPPEAIPSLVNSLSIKHVKTFDMDPRVTKSFANTGISLSLCIPNDKIPILASNASEAESIIRTFILPYHKNTIITSIAVGNEVSLMPQ FSSHLVSAMENVHQAIKRYRLHKKIKVSTTHSLAILSRRFPPSAAIFHKSIAESVLKPLVRFLQRTNSPLMVNVYPYLAYKQSFPSIPLDFALFQPMNNS KRRKYTDPYSGVTYTNLFDIMLDSVDSAVKSLGLPKIPMMVSEIGWPSSGDPGEVAANLENARVFNQRLIQHLKRRGWNKIPVYIFALFDEDQKTGATVE KHWGLLYGNGSRKYDLN

Full Sequence
Protein Sequence Length: 360 Download
MIMMMMTTTK HYTFWILLIF SISMASCSTI PSLGAPEIGI NYGRYGSNLP PPEAIPSLVN 60 SLSIKHVKTF DMDPRVTKSF ANTGISLSLC IPNDKIPILA SNASEAESII RTFILPYHKN 120 TIITSIAVGN EVSLMPQFSS HLVSAMENVH QAIKRYRLHK KIKVSTTHSL AILSRRFPPS 180 AAIFHKSIAE SVLKPLVRFL QRTNSPLMVN VYPYLAYKQS FPSIPLDFAL FQPMNNSKRR 240 KYTDPYSGVT YTNLFDIMLD SVDSAVKSLG LPKIPMMVSE IGWPSSGDPG EVAANLENAR 300 VFNQRLIQHL KRRGWNKIPV YIFALFDEDQ KTGATVEKHW GLLYGNGSRK YDLNISPPI* 360

Full Sequence

Protein Sequence Length: 360 Download

MIMMMMTTTK HYTFWILLIF SISMASCSTI PSLGAPEIGI NYGRYGSNLP PPEAIPSLVN    60
SLSIKHVKTF DMDPRVTKSF ANTGISLSLC IPNDKIPILA SNASEAESII RTFILPYHKN    120
TIITSIAVGN EVSLMPQFSS HLVSAMENVH QAIKRYRLHK KIKVSTTHSL AILSRRFPPS    180
AAIFHKSIAE SVLKPLVRFL QRTNSPLMVN VYPYLAYKQS FPSIPLDFAL FQPMNNSKRR    240
KYTDPYSGVT YTNLFDIMLD SVDSAVKSLG LPKIPMMVSE IGWPSSGDPG EVAANLENAR    300
VFNQRLIQHL KRRGWNKIPV YIFALFDEDQ KTGATVEKHW GLLYGNGSRK YDLNISPPI*    360

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
COG5309	COG5309	8.0e-9	273	346	77	+ Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
pfam00332	Glyco_hydro_17	4.0e-92	38	354	322	+ Glycosyl hydrolases family 17.

Gene Ontology
GO Term	Description
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975	carbohydrate metabolic process

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
GenBank	ABK28613.1	0	1	359	1	375	unknown [Arabidopsis thaliana]
RefSeq	NP_001144992.1	0	37	354	25	344	hypothetical protein LOC100278152 [Zea mays]
RefSeq	NP_191740.1	0	1	359	1	375	glycosyl hydrolase family 17 protein [Arabidopsis thaliana]
RefSeq	XP_002283473.1	0	18	356	7	345	PREDICTED: similar to beta-1,3-glucanase [Vitis vinifera]
RefSeq	XP_002514201.1	0	18	356	7	345	Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	1ghs_B	0	38	353	1	304	A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities
PDB	1ghs_A	0	38	353	1	304	A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities
PDB	2cyg_A	0	38	353	1	310	A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome
PDB	3f55_D	0	37	356	1	316	A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome
PDB	3f55_C	0	37	356	1	316	A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome

EST Download unfiltered results here

Hit	Length	Start	End	EValue
BY808987	155	206	360	0
CX270921	155	179	333	0
CB259129	123	238	360	0
CX270921	52	310	357	0.000004
CX270921	20	160	179	1.6

Orthologous Group
Species	ID
Arabidopsis lyrata	324620
Arabidopsis thaliana	AT3G61810.1
Brassica rapa	Bra003475
Capsella rubella	Carubv10017450m

Signal Peptide

Cleavage Site
27

CAZyme Information