| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10006630m |
| Family | GH28 |
| Protein Properties | Length: 1106 Molecular Weight: 121055 Isoelectric Point: 5.5082 |
| Chromosome | Chromosome/Scaffold: 5 Start: 7100419 End: 7105416 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 732 | 1063 | 0 |
| WSKACSAPKSVLLVPQGRSYLVNATKFIGPCEQKLIIQIDGTIVAPDEPGNWDPKFQRIWLEFSKLKGVVFQGNGVIDGSGSKWWAASCKKNKSNPCKSA PTALTIESSSGVKISGLTIQNSQQMNFIIARSNSVRVSKVKVSSPGDSPNTDGIHITGSTNVVLQDCKIGTGDDCVSIVNASSNIKMKNIYCGPGHGISI GSLGNNNSTGIVTNVVLDTAFLRETTNGLRIKTYQGGSGYVQGVRFTNVQMQDVSNPILIDQFYCDNPTSCQNQTSAVKISQIMYRNITGTTKSEKAIKF ACSDTVPCSHIVLNNVNLEGKDGQVEAYCNSA | |||
| Full Sequence |
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| Protein Sequence Length: 1106 Download |
| MRGAQALNFL RRTTTLAQHL SPAPPLTAAT RLALRSFLEE NPNDLVYTHN RKIDELIKSG 60 DLTSAYEVFD GMSVRDVVTY NLLISGNSRN GCSIRAIELY AEMVSHGLRE SASTFPSVLS 120 VCSDEWFCRE GTQVHCRVIS LGFGCNMFVR SALVGLYASL RLLNVALKLF DEMSERNLAV 180 CNLLLRCFCE TGDSKRLFRV YEKMGLESVT ENGLTYCYMI RGCSNDRLLY EGKQLHSLVV 240 KSGWDISNIF VANALVDLYS ACGDLSGSKK SFNAVPEEDV ISWNSIVSVC ADYGSVLDSL 300 DLFSKMQFWG KRPSIRSFMS FLNFCSRNSD VQSGKQIHCF VLKMGFDVSS LHVQSGLIDM 360 YGKCNDIESS VSVYQSLPGL TLECCNSLMT SLMHCGITKD IIEMFGLMID EGTGIDEVTL 420 STVLKALSLS VPPSLHSFAL VHCCAIKSGY ASDVAVSCSL IDAYSKSGQN EVSRKVFDEL 480 DSPNIFCWTS IINGYARNGM GRDCVEMLRE MDQKNLVPDE VTILSVLSGC SHSGLVEEGE 540 LIFDSLESKY GISPGRKLYA CMVDLLGRAG LVEKAERLLL RARGDADCIA WSSLLQSCRI 600 HGNESIGRRA AEVLMDLEPE NFSVYIQISK FYFEIGDFEI SRQIRETAAS RELMREIGYT 660 AGKMVYTDLD ILEKLKKFDV PDDDEDFDND TKLFDLPSFK SRSSGKNLVN VDTFGAAGDG 720 VSDDTQAFVS AWSKACSAPK SVLLVPQGRS YLVNATKFIG PCEQKLIIQI DGTIVAPDEP 780 GNWDPKFQRI WLEFSKLKGV VFQGNGVIDG SGSKWWAASC KKNKSNPCKS APTALTIESS 840 SGVKISGLTI QNSQQMNFII ARSNSVRVSK VKVSSPGDSP NTDGIHITGS TNVVLQDCKI 900 GTGDDCVSIV NASSNIKMKN IYCGPGHGIS IGSLGNNNST GIVTNVVLDT AFLRETTNGL 960 RIKTYQGGSG YVQGVRFTNV QMQDVSNPIL IDQFYCDNPT SCQNQTSAVK ISQIMYRNIT 1020 GTTKSEKAIK FACSDTVPCS HIVLNNVNLE GKDGQVEAYC NSAEGFGYGV IHPSADCLYS 1080 HDDKCLDQSH KPGPVLVTEP GHDEL* 1140 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03077 | PLN03077 | 3.0e-82 | 56 | 660 | 608 | + Protein ECB2; Provisional | ||
| PLN03003 | PLN03003 | 8.0e-84 | 707 | 1078 | 380 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-84 | 736 | 1063 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 5.0e-98 | 709 | 1073 | 368 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-118 | 698 | 1089 | 394 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF79584.1 | 0 | 1 | 1105 | 1 | 1161 | AC007945_4 F28C11.9 [Arabidopsis thaliana] |
| EMBL | CAN65318.1 | 0 | 32 | 1086 | 31 | 1030 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI28554.1 | 0 | 32 | 1086 | 31 | 1089 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_173759.2 | 0 | 1 | 661 | 1 | 661 | unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_173760.2 | 0 | 661 | 1105 | 22 | 460 | polygalacturonase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 8e-22 | 804 | 1024 | 115 | 338 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 2e-19 | 800 | 1051 | 72 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-19 | 800 | 1051 | 72 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-19 | 800 | 1051 | 72 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-19 | 800 | 1051 | 72 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EV524933 | 216 | 894 | 1106 | 0 |
| EV545642 | 201 | 909 | 1106 | 0 |
| EX891854 | 199 | 911 | 1106 | 0 |
| EV550328 | 224 | 745 | 968 | 0 |
| EV170498 | 198 | 912 | 1106 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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