Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10006640m |
Family | CBM22 |
Protein Properties | Length: 1064 Molecular Weight: 118600 Isoelectric Point: 5.0905 |
Chromosome | Chromosome/Scaffold: 5 Start: 12298077 End: 12302329 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 349 | 481 | 1.9e-28 |
IFLNTSFSDGLNHWSGRGCNLMLHESLADGKILPHSGTCFASATERTHKWSGIEQDITERVQRKLIYEASSVVRLSHSHHTVQASLYVQYLDQREEYIGI SSVEANHEDWVKLEGKFLLNGSPARAVVYIEGP | |||
CBM22 | 182 | 312 | 5.7e-31 |
NIIKNHDFSDGLYSWNSNSCDSFVVSSNDCDLESYAVVNNRNETWQGLEQDITDRVSPGYSYKVSASVSVSGPVQKSAQVLATLKLEHQSSATEFQLIGK TYASKDIWKTLEGTFVLSGRSDRVVFFLEGP | |||
CBM22 | 5 | 143 | 6.2e-34 |
NIVMNGDFSDGMEPWYPNGCEAFVVSSDPFSSDSIPESSSCGYAVVTNRKETWQGLEQDITTQVSPCITYAVSACVGVSGPFHESAEVLATVRLEHEDSP TEYLFIGKTYASRDKWVDLKGTFSIPNMPDRVVLYLEGP | |||
CBM22 | 516 | 660 | 4.7e-39 |
NIVSNSHLSDGTIEGWFPLGNCHLRVGEGSPRILPPLARDSLRTTHGYLSGRYVLATNRSGTWMGPAQMITDKVKLFLTYQVSAWVKIGSGGPTCPQDVN IALSVDGTWVNGGKVEVDDGDWHEVTGSFRIEKQAKEVMLHVQGP | |||
GH10 | 718 | 1002 | 0 |
QTQNSFPLGSCISRSNIDNEDFVDFFLNNFKWAVFGNELKWYWTEPEQGSFNYRDADEMLGFCERYNIETRGHCIFWEVESAIQPWVQQLSGSELEEAVE NRVTDLLTRYNGKFRHYDVNNEMLHGSFYRDRLGFDARAKMFKTAHELDPLATLFLNEYHIEDGFDSRSSPEKYIKLVHKLQKRGAPVGGIGIQGHITSP VGHIVRSALDKLSTLGLPIWFTELDVSSINEHIRGDDLEVMLWEAFAHPAVEGVMLWGFWELFMSREHSHLVNADGEVNEAGKRF |
Full Sequence |
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Protein Sequence Length: 1064 Download |
MADSNIVMNG DFSDGMEPWY PNGCEAFVVS SDPFSSDSIP ESSSCGYAVV TNRKETWQGL 60 EQDITTQVSP CITYAVSACV GVSGPFHESA EVLATVRLEH EDSPTEYLFI GKTYASRDKW 120 VDLKGTFSIP NMPDRVVLYL EGPAPGKDLL IRSVTVRSSA TRDFQEAEEN TAASSGFPPA 180 LNIIKNHDFS DGLYSWNSNS CDSFVVSSND CDLESYAVVN NRNETWQGLE QDITDRVSPG 240 YSYKVSASVS VSGPVQKSAQ VLATLKLEHQ SSATEFQLIG KTYASKDIWK TLEGTFVLSG 300 RSDRVVFFLE GPPPGIDLLI KSVTIHCESD NQTERSREFC SAPEADHHIF LNTSFSDGLN 360 HWSGRGCNLM LHESLADGKI LPHSGTCFAS ATERTHKWSG IEQDITERVQ RKLIYEASSV 420 VRLSHSHHTV QASLYVQYLD QREEYIGISS VEANHEDWVK LEGKFLLNGS PARAVVYIEG 480 PPPGIDVLVD HFDVKPAEKS PPSKRPNIES HAFGMNIVSN SHLSDGTIEG WFPLGNCHLR 540 VGEGSPRILP PLARDSLRTT HGYLSGRYVL ATNRSGTWMG PAQMITDKVK LFLTYQVSAW 600 VKIGSGGPTC PQDVNIALSV DGTWVNGGKV EVDDGDWHEV TGSFRIEKQA KEVMLHVQGP 660 SPGVDLMVAG LQIFAVDHKA RLSYLRGQAD VVRKRNVRLK FSGLDPSELS GATVKIKQTQ 720 NSFPLGSCIS RSNIDNEDFV DFFLNNFKWA VFGNELKWYW TEPEQGSFNY RDADEMLGFC 780 ERYNIETRGH CIFWEVESAI QPWVQQLSGS ELEEAVENRV TDLLTRYNGK FRHYDVNNEM 840 LHGSFYRDRL GFDARAKMFK TAHELDPLAT LFLNEYHIED GFDSRSSPEK YIKLVHKLQK 900 RGAPVGGIGI QGHITSPVGH IVRSALDKLS TLGLPIWFTE LDVSSINEHI RGDDLEVMLW 960 EAFAHPAVEG VMLWGFWELF MSREHSHLVN ADGEVNEAGK RFLEIKREWL TFVDGVIKDE 1020 EGGLEFRGYH GSYTVEVVTS EGKYVKNFVV DKGNSPIDII IDL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 9.0e-19 | 4 | 147 | 146 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 3.0e-19 | 182 | 314 | 135 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 1.0e-35 | 754 | 976 | 248 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 2.0e-75 | 721 | 1006 | 306 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 1.0e-81 | 756 | 1002 | 268 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172476.1 | 0 | 1 | 1063 | 1 | 1063 | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Arabidopsis thaliana] |
RefSeq | NP_176133.1 | 0 | 4 | 499 | 28 | 529 | RXF12; endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
RefSeq | NP_176133.1 | 0 | 162 | 1063 | 6 | 914 | RXF12; endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
RefSeq | XP_002301133.1 | 4e-33 | 2 | 325 | 332 | 660 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 5 | 1063 | 2 | 1049 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1i1x_A | 3e-27 | 746 | 944 | 39 | 241 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 1i1w_A | 3e-27 | 746 | 944 | 39 | 241 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1xyz_B | 1e-26 | 687 | 976 | 2 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1xyz_A | 1e-26 | 687 | 976 | 2 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1tux_A | 9e-26 | 754 | 944 | 47 | 241 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO850973 | 328 | 644 | 971 | 0 |
EB442796 | 300 | 544 | 843 | 0 |
EB442796 | 113 | 47 | 156 | 0.00000006 |
EB442796 | 120 | 382 | 499 | 0.000002 |
EB442796 | 142 | 216 | 357 | 0.006 |
Sequence Alignments (This image is cropped. Click for full image.) |
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