Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10007038m |
Family | PL4 |
Protein Properties | Length: 645 Molecular Weight: 73733.8 Isoelectric Point: 5.7844 |
Chromosome | Chromosome/Scaffold: 5 Start: 12378552 End: 12381822 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 24 | 620 | 0 |
LQLHYEDRHVVLDNGIFQLTLSSPEGFVTGIRYNNIENVLAYNGGEHDRGYWDLVWNFPGKKTKKTKGTLDRIEATKMEVITQSDEKIEISFSRTWNASS TLAVPVNIDKRFVMLRNSSGFYTYAIFERLKGWPAVELDNIRLAFKLNKDKFHYMAISDERQRYMPQADDRIPPRGKPLAYPEAVQLLDPTNPEFKGEVD DKYAYSMESKDIKVHGWISTNDSVGFWQITPSNEFRSSGPLKQFLGSHVGPTNLAIFHSTHYVGADLIMKFEEGEAWKKVFGPVFIYLNSFPQGVDPLLL WHQAKNQTKIEEQKWPYNFTTSSDFPASDQRGCVSGRFLVRDRYISSEDIPANGSYVGLAAPGDAGSWQKEYKGYQFWSKADEKGYFSINNVRSGRYNLY AFALGFIGDYHNDTVFDISPGSNISLGDLVYEPPRDGVTLWEIGVPDSSLMFHVRQYGLWERYSELYPDEDMVYNVDVDDYSKNWFFMQVTRKQPDGGYN GTTWQIKFQLDDKMKNFTGKFKLRIALATSNVAELQVRVNDFSVDPPLFTTGQIGRDNTIARHGIHGLYWLYSVNVPASSFRQGDNSIYLTQPLATS |
Full Sequence |
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Protein Sequence Length: 645 Download |
MFLSLFEIAI SQNQSPDPES TQVLQLHYED RHVVLDNGIF QLTLSSPEGF VTGIRYNNIE 60 NVLAYNGGEH DRGYWDLVWN FPGKKTKKTK GTLDRIEATK MEVITQSDEK IEISFSRTWN 120 ASSTLAVPVN IDKRFVMLRN SSGFYTYAIF ERLKGWPAVE LDNIRLAFKL NKDKFHYMAI 180 SDERQRYMPQ ADDRIPPRGK PLAYPEAVQL LDPTNPEFKG EVDDKYAYSM ESKDIKVHGW 240 ISTNDSVGFW QITPSNEFRS SGPLKQFLGS HVGPTNLAIF HSTHYVGADL IMKFEEGEAW 300 KKVFGPVFIY LNSFPQGVDP LLLWHQAKNQ TKIEEQKWPY NFTTSSDFPA SDQRGCVSGR 360 FLVRDRYISS EDIPANGSYV GLAAPGDAGS WQKEYKGYQF WSKADEKGYF SINNVRSGRY 420 NLYAFALGFI GDYHNDTVFD ISPGSNISLG DLVYEPPRDG VTLWEIGVPD SSLMFHVRQY 480 GLWERYSELY PDEDMVYNVD VDDYSKNWFF MQVTRKQPDG GYNGTTWQIK FQLDDKMKNF 540 TGKFKLRIAL ATSNVAELQV RVNDFSVDPP LFTTGQIGRD NTIARHGIHG LYWLYSVNVP 600 ASSFRQGDNS IYLTQPLATS PFQGLMYDYI RLECPDSVNH LTRS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 3.0e-30 | 353 | 452 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 6.0e-43 | 464 | 633 | 177 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 1.0e-67 | 29 | 313 | 287 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 8.0e-98 | 3 | 222 | 220 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172459.1 | 0 | 35 | 644 | 1 | 631 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002527353.1 | 0 | 22 | 635 | 4 | 633 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527356.1 | 0 | 32 | 643 | 127 | 754 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527356.1 | 3.99931e-42 | 96 | 222 | 1 | 128 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 20 | 635 | 2 | 634 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FY443137 | 262 | 402 | 642 | 0 |
DK474983 | 233 | 1 | 233 | 0 |
EX058229 | 224 | 28 | 251 | 0 |
DW479599 | 295 | 21 | 314 | 0 |
DW479600 | 295 | 21 | 314 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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