| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10007255m |
| Family | GH28 |
| Protein Properties | Length: 561 Molecular Weight: 61901.8 Isoelectric Point: 8.8025 |
| Chromosome | Chromosome/Scaffold: 5 Start: 12066174 End: 12070284 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 172 | 514 | 0 |
| ACKIEASMMIVPSEYIFLVGPITFSGPYCQANIVFQLEGTIIAPTDSKSWGKGLMWWIDFTKLKGIKVQGKGVIDGRGSGWWQQDYPFIDGETKLIVPLN NSVHQNPPMPIRSELDWKMPSIKPTALRFSGSTGVEVSGITIQNSPQCHLKFDNCVDVLVHDMSVSSPGDSPNTDGIHLQNTREVLIHSTTLACGDDCIS IQTGCSNVYVHNVNCGPGHGISIGSLGKDSTKACVSNITVRDVTMHNTMTGVRIKTWQGGVGSVKGILFSNIQLNEVQLPIVIDQFYCDHSKCKNQTSAV AVEGVTYERIKGTYTVKPVHLACSDNFPCVDVHLSAIELKPVQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 561 Download |
| MSVKWCIVLV STTTKHTSST QRKMTMRRSL KLRSFTMMIL MAVLVWSVTL ETCIARRGRH 60 WRHKHRSSSS SSDVSGSLSG KKPKSHGNSH HSSHHNNNNH HHKSKPKPKP KLKMPPKSHH 120 DNSPVVSGPP KVQPPSLPPQ KGSQVFNVMD FGAKGDGKCD DTKAFEATWA EACKIEASMM 180 IVPSEYIFLV GPITFSGPYC QANIVFQLEG TIIAPTDSKS WGKGLMWWID FTKLKGIKVQ 240 GKGVIDGRGS GWWQQDYPFI DGETKLIVPL NNSVHQNPPM PIRSELDWKM PSIKPTALRF 300 SGSTGVEVSG ITIQNSPQCH LKFDNCVDVL VHDMSVSSPG DSPNTDGIHL QNTREVLIHS 360 TTLACGDDCI SIQTGCSNVY VHNVNCGPGH GISIGSLGKD STKACVSNIT VRDVTMHNTM 420 TGVRIKTWQG GVGSVKGILF SNIQLNEVQL PIVIDQFYCD HSKCKNQTSA VAVEGVTYER 480 IKGTYTVKPV HLACSDNFPC VDVHLSAIEL KPVQERYHMY DPFCWQTFGE LNTPTLPPID 540 CLQIGKPPRN RVHDSDHDQC * 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 9.0e-77 | 144 | 510 | 373 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 3.0e-78 | 142 | 511 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-80 | 175 | 510 | 337 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 7.0e-87 | 147 | 511 | 369 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-101 | 144 | 538 | 400 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF17670.1 | 0 | 24 | 560 | 1 | 542 | AC009398_19 F20B24.8 [Arabidopsis thaliana] |
| GenBank | AAL31197.1 | 0 | 102 | 560 | 3 | 473 | At1g60590/F8A5_12 [Arabidopsis thaliana] |
| GenBank | ABK95830.1 | 0 | 24 | 560 | 1 | 516 | unknown [Populus trichocarpa] |
| RefSeq | NP_563875.6 | 0 | 24 | 560 | 1 | 532 | polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_564758.2 | 0 | 24 | 560 | 1 | 539 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 4e-19 | 310 | 510 | 115 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 4e-19 | 310 | 510 | 115 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 4e-19 | 310 | 510 | 115 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 4e-19 | 310 | 510 | 115 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 4e-19 | 310 | 510 | 115 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
