| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10007407m |
| Family | GH28 |
| Protein Properties | Length: 508 Molecular Weight: 56648.9 Isoelectric Point: 9.6545 |
| Chromosome | Chromosome/Scaffold: 5 Start: 8922793 End: 8925328 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 121 | 469 | 0 |
| SGGGQLNVPPGRWLTAPFNLTSHMTLFLAEDSEILGVEDEKYWPLMPPLPSYGYGRERPGPRYGSLIHGQNLKDIVITGHNGTINGQGQSWWKKHQRRLL NNTRGPLVQIMWSSDIVIANITLRDSPFWTLHPYDCKNITIRNVTILAPVTGAPNTDGIDPDSCEDMVIEDCYISTGDDAIAIKSGWDQFGIAYGRPSTN ILIRNLVVRSIISAGVSIGSEMSGGISNVTIENLVIWNSRRGVRIKTAPGRGGYIRNITYKNLTLDNVRVGIVIKTDYNEHADDNFDRKAFPTLSGFSFT GIRGQGVRVPVRIHGSEQIPVRNVTFRDMSVGLTYKKKHIFQCSYVKGR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 508 Download |
| MVENLLPTRF QFHLQRLDPK RRFTSLLASH KTLLFTFLWI AAFCSLFLWQ RTAYIGGSVV 60 GPVGGGKFTI FGRIKPTKPL PRLRPVVFDL KDFGGVGDGF TLNTEAFERA MMSISKLGRN 120 SGGGQLNVPP GRWLTAPFNL TSHMTLFLAE DSEILGVEDE KYWPLMPPLP SYGYGRERPG 180 PRYGSLIHGQ NLKDIVITGH NGTINGQGQS WWKKHQRRLL NNTRGPLVQI MWSSDIVIAN 240 ITLRDSPFWT LHPYDCKNIT IRNVTILAPV TGAPNTDGID PDSCEDMVIE DCYISTGDDA 300 IAIKSGWDQF GIAYGRPSTN ILIRNLVVRS IISAGVSIGS EMSGGISNVT IENLVIWNSR 360 RGVRIKTAPG RGGYIRNITY KNLTLDNVRV GIVIKTDYNE HADDNFDRKA FPTLSGFSFT 420 GIRGQGVRVP VRIHGSEQIP VRNVTFRDMS VGLTYKKKHI FQCSYVKGRV FGSIFPRPCE 480 NFDVYDEEGR LVKPAAESNV TDIDYDI* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 8.0e-26 | 201 | 481 | 286 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 2.0e-29 | 76 | 479 | 422 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 6.0e-35 | 88 | 451 | 381 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-41 | 187 | 467 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 5.0e-65 | 87 | 405 | 344 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF82228.1 | 0 | 1 | 507 | 1 | 533 | AC069143_4 Contains similarity to a polygalacturonase-like protein gi |
| GenBank | AAL91166.1 | 0 | 1 | 507 | 1 | 506 | unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_173351.1 | 0 | 1 | 507 | 1 | 506 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002324728.1 | 0 | 1 | 506 | 1 | 494 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516244.1 | 0 | 11 | 506 | 10 | 493 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 81 | 448 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 81 | 448 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 81 | 448 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 81 | 448 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 7e-19 | 133 | 451 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
