| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10007481m |
| Family | GH28 |
| Protein Properties | Length: 489 Molecular Weight: 52837.3 Isoelectric Point: 6.5862 |
| Chromosome | Chromosome/Scaffold: 5 Start: 15100301 End: 15102776 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 114 | 453 | 0 |
| SNENDTVSVLLVPYGYTFMIQSTIFTGPCRSYQLFQVDGTIVTPDGPESWPSNISKRQWLVFYRVNGMALKGAGVIDGRGQKWWDLPCKPHRAVNKSAVV AGPCDSPIALRFFMSSNLTVEGLQIKNSPQFHFRFDGCQGVNVDSLHITAPPLSPNTDGIHIENSNSVTIYNSVISNGDDCVSIGSGSYDVDIRNLTCGP GGHGISIGSLGNHNSHACVSNITVRDSVIKYSDNGVRIKTWQGGSGSVSGVTFNNIHVDTVRNPIIIDQYYCMTKDCSNKTSAVFVSDIAYQGIKGTYDI RSPPMHFGCSDAVPCTNLTLSDIELLPAKGEIVSDPFCWN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 489 Download |
| MLNSSYTRNQ ILCFITLVLT LISMAESRSH HHKQKHKHNS HNHHSSKPHP PYSSISQPPT 60 PPPGPTDSPS PSLPPSPSDD NNDVIYNVRK FGAVGDGVTD DTEAFKTAWD SSCSNENDTV 120 SVLLVPYGYT FMIQSTIFTG PCRSYQLFQV DGTIVTPDGP ESWPSNISKR QWLVFYRVNG 180 MALKGAGVID GRGQKWWDLP CKPHRAVNKS AVVAGPCDSP IALRFFMSSN LTVEGLQIKN 240 SPQFHFRFDG CQGVNVDSLH ITAPPLSPNT DGIHIENSNS VTIYNSVISN GDDCVSIGSG 300 SYDVDIRNLT CGPGGHGISI GSLGNHNSHA CVSNITVRDS VIKYSDNGVR IKTWQGGSGS 360 VSGVTFNNIH VDTVRNPIII DQYYCMTKDC SNKTSAVFVS DIAYQGIKGT YDIRSPPMHF 420 GCSDAVPCTN LTLSDIELLP AKGEIVSDPF CWNAYGIAEE LSIPPVWCLM SDPPTALQGA 480 LVGKCGSS* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 4.0e-80 | 79 | 465 | 391 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 7.0e-81 | 87 | 473 | 393 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-87 | 119 | 438 | 320 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 4.0e-94 | 87 | 438 | 355 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-118 | 85 | 472 | 390 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD22651.1 | 0 | 7 | 487 | 5 | 451 | AC007138_15 putative polygalacturonidase [Arabidopsis thaliana] |
| EMBL | CBI37004.1 | 0 | 81 | 481 | 84 | 481 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_192098.2 | 0 | 7 | 487 | 5 | 467 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_563654.1 | 0 | 1 | 488 | 1 | 491 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002320271.1 | 0 | 81 | 476 | 38 | 429 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 2e-24 | 150 | 442 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-24 | 150 | 442 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-24 | 150 | 442 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-24 | 150 | 442 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 2e-24 | 150 | 442 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
