y
Basic Information | |
---|---|
Species | Thellungiella halophila |
Cazyme ID | Thhalv10007521m |
Family | PL4 |
Protein Properties | Length: 477 Molecular Weight: 54444.5 Isoelectric Point: 6.1984 |
Chromosome | Chromosome/Scaffold: 5 Start: 12366432 End: 12368756 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL4 | 23 | 458 | 0 |
QTLDYQEASLLTAPCDPHLQGEVDDKYQYSCENKDLRVHGWISFDPPVGFWQITPSNEFRSGGPLKQNLTSHVGPTTLAVFHSTHYAGKTMMPRFECGEP WKKVFGPVFIYLNSTANRDDSLCLWDDAKIKMKAEVESWPYSFVASEDYPKSEERGWAHGRLLIHDRFISNDLISARGAYVGLAPPGDAGSWQIECKGYQ FWAIADEAGYFSIENVRPGEYNLYAWVPGFIGDYRNDTIVTVTSGCKIEMGDIVYEPPRDGPTLWEIGIPDRKASEFFIPDPDPMLVNRALVHHQDRFRQ YGLWKRYTDLYPNDDLVYTIGVSDYRRDWFFAHVPRKKGDVHEGTTWQIRFKLENTDQKANYKLRVAIASATLAELQVRVNDAEAIRPLFTTGLIGRDNS IARHGIHGVYMLYTVNIPGNRFVQGDNTIFLKQPRC |
Full Sequence |
---|
Protein Sequence Length: 477 Download |
MAMADDRKRI MPFPDDLCKG RCQTLDYQEA SLLTAPCDPH LQGEVDDKYQ YSCENKDLRV 60 HGWISFDPPV GFWQITPSNE FRSGGPLKQN LTSHVGPTTL AVFHSTHYAG KTMMPRFECG 120 EPWKKVFGPV FIYLNSTANR DDSLCLWDDA KIKMKAEVES WPYSFVASED YPKSEERGWA 180 HGRLLIHDRF ISNDLISARG AYVGLAPPGD AGSWQIECKG YQFWAIADEA GYFSIENVRP 240 GEYNLYAWVP GFIGDYRNDT IVTVTSGCKI EMGDIVYEPP RDGPTLWEIG IPDRKASEFF 300 IPDPDPMLVN RALVHHQDRF RQYGLWKRYT DLYPNDDLVY TIGVSDYRRD WFFAHVPRKK 360 GDVHEGTTWQ IRFKLENTDQ KANYKLRVAI ASATLAELQV RVNDAEAIRP LFTTGLIGRD 420 NSIARHGIHG VYMLYTVNIP GNRFVQGDNT IFLKQPRCNG PFQGIMYDYI RLEGTP* 480 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.0005 | 225 | 267 | 43 | + Carboxypeptidase regulatory-like domain. | ||
pfam06045 | Rhamnogal_lyase | 9.0e-13 | 1 | 45 | 45 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
cd10316 | RGL4_M | 5.0e-31 | 176 | 275 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 8.0e-43 | 5 | 137 | 133 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 7.0e-52 | 287 | 473 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAB60743.1 | 0 | 1 | 476 | 220 | 727 | F21M12.30 gene product [Arabidopsis thaliana] |
RefSeq | NP_172462.2 | 0 | 1 | 476 | 199 | 674 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002306520.1 | 0 | 1 | 476 | 140 | 616 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527352.1 | 0 | 1 | 474 | 156 | 630 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527353.1 | 0 | 1 | 476 | 159 | 634 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
DK517187 | 242 | 236 | 477 | 0 |
EG452795 | 225 | 252 | 476 | 0 |
CN826718 | 235 | 72 | 302 | 0 |
GW864372 | 299 | 1 | 299 | 0 |
CN826718 | 21 | 292 | 312 | 3.5 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|