| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10007721m |
| Family | GH28 |
| Protein Properties | Length: 422 Molecular Weight: 44290.5 Isoelectric Point: 8.2973 |
| Chromosome | Chromosome/Scaffold: 5 Start: 14999355 End: 15001297 |
| Description | polygalacturonase 4 |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 77 | 396 | 0 |
| QVCDSPVPATLLVPKGTFLAGPVIFAGPCKSKVTVEVQGTVIATTSGYATPEWFLFERVDNVHLTGTGTFHGKGEAVWKEDGCGKKVQCNLPPTSLKFRN MKNVEISGISSVNAKAFHMFLVKTENVNIHNIKLIAPAESPNTDGIHLSNADNVSILDSTIATGDDCVSVGRGSNNVTVERVTCGPGHGLSVGSLGKYKD EEDVSGIHVRNCTMIETDNGLRIKTWGGSGPSRAADIKFEDIIMQSVKNPIIIDQNYGSRGGDSKVAISDVLFKNVRGTTITKDIVQIACSKSVPCKGVN VVDVNLSFVGKEGGEKSSSG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 422 Download |
| MANARRLVAK ANNTNVGSLI LMALVFGSCV ANGEYLGGRR GLAANSGNPS VFDITKFGAV 60 GDGSTNSFKA FLNTWIQVCD SPVPATLLVP KGTFLAGPVI FAGPCKSKVT VEVQGTVIAT 120 TSGYATPEWF LFERVDNVHL TGTGTFHGKG EAVWKEDGCG KKVQCNLPPT SLKFRNMKNV 180 EISGISSVNA KAFHMFLVKT ENVNIHNIKL IAPAESPNTD GIHLSNADNV SILDSTIATG 240 DDCVSVGRGS NNVTVERVTC GPGHGLSVGS LGKYKDEEDV SGIHVRNCTM IETDNGLRIK 300 TWGGSGPSRA ADIKFEDIIM QSVKNPIIID QNYGSRGGDS KVAISDVLFK NVRGTTITKD 360 IVQIACSKSV PCKGVNVVDV NLSFVGKEGG EKSSSGGLVG ALCDNANVIF GGKLSFPMCP 420 K* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-83 | 32 | 419 | 401 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 3.0e-84 | 51 | 384 | 345 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 2.0e-86 | 51 | 382 | 346 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-94 | 79 | 383 | 310 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 4.0e-115 | 21 | 420 | 409 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABW24665.1 | 0 | 1 | 421 | 1 | 421 | pollen-specific polygalacturonase [Brassica rapa subsp. campestris] |
| EMBL | CBI36886.1 | 0 | 1 | 419 | 1 | 414 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_171778.1 | 0 | 1 | 421 | 1 | 422 | PGA4 (POLYGALACTURONASE 4); polygalacturonase [Arabidopsis thaliana] |
| RefSeq | XP_002268540.1 | 0 | 1 | 419 | 1 | 410 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301489.1 | 0 | 14 | 419 | 2 | 412 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 5e-19 | 137 | 362 | 110 | 341 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 3e-16 | 43 | 382 | 12 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1ib4_B | 0.000000000000001 | 83 | 394 | 26 | 328 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1ib4_A | 0.000000000000001 | 83 | 394 | 26 | 328 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1ia5_A | 0.000000000000001 | 83 | 394 | 26 | 328 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
