| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10007830m |
| Family | GH28 |
| Protein Properties | Length: 396 Molecular Weight: 41538.4 Isoelectric Point: 9.9621 |
| Chromosome | Chromosome/Scaffold: 5 Start: 13917998 End: 13919859 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 52 | 380 | 0 |
| WQAACGSAASATMMVPTGTFLVKGITFGGPCKSKLKFQVAGTVVAPADYRAFGNSGYWILFNKVSKFSLVGGTFDARGSGFWSCRRSGQNCPPGVRSITF NSGKDVIISGVKSLNSQVSHMTLNGCTNVAVRNVKLLAPGNSPNTDGFGVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLISKLACGPGHGVSIGSLAKQ FNEAGVENVTVSSSVFTGTQNGVRIKSWARPSNGFVNNVFFQNLIMKNVQNPIIIDQNYCPSHQGCPTEHSGVKISQVTYKNIRGTSATQQAMKLVCSKS SPCTGITLQDIKLTYNKGTPATSYCFNAV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 396 Download |
| MTKSKSTLPL LFTLLITFID ASTGASKVFN VLNFGAKPDG VTDSTAAFLE AWQAACGSAA 60 SATMMVPTGT FLVKGITFGG PCKSKLKFQV AGTVVAPADY RAFGNSGYWI LFNKVSKFSL 120 VGGTFDARGS GFWSCRRSGQ NCPPGVRSIT FNSGKDVIIS GVKSLNSQVS HMTLNGCTNV 180 AVRNVKLLAP GNSPNTDGFG VQFSTGVTFT GSTVQTGDDC VAIGPGTRNF LISKLACGPG 240 HGVSIGSLAK QFNEAGVENV TVSSSVFTGT QNGVRIKSWA RPSNGFVNNV FFQNLIMKNV 300 QNPIIIDQNY CPSHQGCPTE HSGVKISQVT YKNIRGTSAT QQAMKLVCSK SSPCTGITLQ 360 DIKLTYNKGT PATSYCFNAV GTSLGVIQPT SCLNR* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 3.0e-80 | 21 | 389 | 376 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-87 | 63 | 379 | 322 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-92 | 25 | 392 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 1.0e-98 | 27 | 394 | 375 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 0 | 20 | 395 | 376 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_172056.1 | 0 | 1 | 395 | 1 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | NP_172057.1 | 0 | 1 | 395 | 1 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | NP_181917.1 | 0 | 10 | 393 | 11 | 392 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002309713.1 | 0 | 22 | 393 | 20 | 390 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331634.1 | 0 | 1 | 393 | 1 | 390 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rmg_A | 5e-22 | 24 | 382 | 16 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1bhe_A | 2e-21 | 104 | 365 | 121 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 9e-20 | 122 | 368 | 77 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 9e-20 | 122 | 368 | 77 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 9e-20 | 122 | 368 | 77 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
