| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10009339m |
| Family | GH28 |
| Protein Properties | Length: 275 Molecular Weight: 29760.9 Isoelectric Point: 8.161 |
| Chromosome | Chromosome/Scaffold: 5 Start: 9619822 End: 9620786 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 110 | 245 | 2.2e-38 |
| VAVLSGNTNIDIYNVTCGPGHGISVGSLGKYSDEKNIEGLTVRDTIFTGTSNGIRIKTWESSTIAIVVSNVVYENIQMIDVGSPITIDQKYCPHPPCEKM GYSHVQIQDVTLKNVWGTSMNKVALNLQCSKSFPTH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 275 Download |
| MAACINFALK ALCLSLLFHA VKSLRAAGPK VWSGVFRYNT FCRNMGFDFV NNSNIEGITS 60 LNSKAAHFNF FTVHHFNITG VNITAPGDSP NTDGIQNRLF QAMGRLSRRV AVLSGNTNID 120 IYNVTCGPGH GISVGSLGKY SDEKNIEGLT VRDTIFTGTS NGIRIKTWES STIAIVVSNV 180 VYENIQMIDV GSPITIDQKY CPHPPCEKMG YSHVQIQDVT LKNVWGTSMN KVALNLQCSK 240 SFPTHNGIDG PETALCENVE GSASGKMVPP HCLN* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 4.0e-38 | 52 | 269 | 231 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 4.0e-38 | 16 | 274 | 293 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 8.0e-42 | 43 | 274 | 250 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-56 | 28 | 264 | 261 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 3.0e-66 | 49 | 272 | 244 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD50028.1 | 0 | 23 | 273 | 95 | 368 | AC007651_23 Similar to polygalacturonase [Arabidopsis thaliana] |
| EMBL | CAB36840.1 | 0 | 45 | 274 | 125 | 375 | putative polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_173158.1 | 0 | 23 | 273 | 128 | 401 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_181560.1 | 0 | 45 | 274 | 154 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_193112.2 | 0 | 45 | 274 | 154 | 404 | polygalacturonase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.000000002 | 58 | 240 | 167 | 349 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.000000002 | 5 | 264 | 63 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.000000002 | 5 | 264 | 63 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.000000002 | 5 | 264 | 63 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.000000002 | 5 | 264 | 63 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
