y
Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10009641m |
Family | GH28 |
Protein Properties | Length: 402 Molecular Weight: 43755.9 Isoelectric Point: 8.6381 |
Chromosome | Chromosome/Scaffold: 5 Start: 9616945 End: 9619037 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 54 | 389 | 0 |
KDACAQSGSSRIYIPRETFYMSDVSFKGPCKGKIVFFLSGTLLSPVNANKFKQEAWIDFQYVDNLVISGGGTIDGQGSHSWSSNMNDCGAGAMNRRRTPN MKFHSVTNSSLIGLKSLNSKSEHLSIYRVDHFNITGVNITAPGNSPNTDGIKIGHSKNMKIWDSHIGTGDDCIAILSGNSNFDIHNITCGPGHGISVGSL GRNKEEKNVEGFRVRDTVFTGTSDGIRLKTWESSVSEITVSQLLYENIQMVDVKYPINIEQNYCPCPPCPKLGDSHVQIRNVTLKNIWGTSRNKVAVKMH CSKTFPCKDIQLIDINITHNGPGGPATALCENVRGS |
Full Sequence |
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Protein Sequence Length: 402 Download |
MACVTNVIEI LCLFILFVVV ASRPDTGKNF DVRTYGAKGD GITDSANAFM KAWKDACAQS 60 GSSRIYIPRE TFYMSDVSFK GPCKGKIVFF LSGTLLSPVN ANKFKQEAWI DFQYVDNLVI 120 SGGGTIDGQG SHSWSSNMND CGAGAMNRRR TPNMKFHSVT NSSLIGLKSL NSKSEHLSIY 180 RVDHFNITGV NITAPGNSPN TDGIKIGHSK NMKIWDSHIG TGDDCIAILS GNSNFDIHNI 240 TCGPGHGISV GSLGRNKEEK NVEGFRVRDT VFTGTSDGIR LKTWESSVSE ITVSQLLYEN 300 IQMVDVKYPI NIEQNYCPCP PCPKLGDSHV QIRNVTLKNI WGTSRNKVAV KMHCSKTFPC 360 KDIQLIDINI THNGPGGPAT ALCENVRGSA RGKMVPPSCF K* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 4.0e-80 | 26 | 396 | 375 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-82 | 21 | 400 | 388 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 1.0e-86 | 6 | 400 | 399 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 9.0e-90 | 57 | 390 | 334 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 4.0e-115 | 30 | 399 | 371 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_173158.1 | 0 | 13 | 400 | 15 | 401 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_175003.1 | 0 | 1 | 400 | 1 | 403 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_179147.1 | 0 | 1 | 400 | 1 | 403 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_179148.1 | 0 | 1 | 396 | 1 | 399 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_193112.2 | 0 | 1 | 400 | 1 | 403 | polygalacturonase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-19 | 63 | 390 | 24 | 334 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-19 | 63 | 390 | 24 | 334 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-19 | 63 | 390 | 24 | 334 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-19 | 63 | 390 | 24 | 334 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-19 | 63 | 390 | 24 | 334 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |