Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10009800m |
Family | CE8 |
Protein Properties | Length: 400 Molecular Weight: 43872.6 Isoelectric Point: 8.1738 |
Chromosome | Chromosome/Scaffold: 5 Start: 14060538 End: 14062450 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 98 | 390 | 0 |
CVDKNGCCNFTTVQSAVDAIGNFSQRRNVIWINSGMYYEKVVIPKTKPNITLQGQGFETTAIAWNDTAYSANGTFYCASVQVFGSQFIAKNISFMNVAPI PKPGDVGAQAVAIRIAGDESAFVGCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNAKSLYQDCQIISMANQLSPGSKAVNGAVTANGRNSKDENSGF SFVNCSIGGTGHVWLGRAWRPYSRVVFVSTSMTDVIAPEGWNNFNDPSRDATIFYGEYNCSGPGAEISKRAAYVQKLNETQVFQFISTSFIDG |
Full Sequence |
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Protein Sequence Length: 400 Download |
MKSRKISLIL SVAIAIIAIF ASKTLFNTHP KAFMHNPFDI LHGIKAISCS AISVVCSHHH 60 HHHHHRHKPS DTKKKVSICD DFPKNIPPPD TNVTSYLCVD KNGCCNFTTV QSAVDAIGNF 120 SQRRNVIWIN SGMYYEKVVI PKTKPNITLQ GQGFETTAIA WNDTAYSANG TFYCASVQVF 180 GSQFIAKNIS FMNVAPIPKP GDVGAQAVAI RIAGDESAFV GCGFFGAQDT LHDDRGRHYF 240 KDCYIQGSID FIFGNAKSLY QDCQIISMAN QLSPGSKAVN GAVTANGRNS KDENSGFSFV 300 NCSIGGTGHV WLGRAWRPYS RVVFVSTSMT DVIAPEGWNN FNDPSRDATI FYGEYNCSGP 360 GAEISKRAAY VQKLNETQVF QFISTSFIDG DQWLQFSDL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02671 | PLN02671 | 6.0e-92 | 90 | 395 | 314 | + pectinesterase | ||
PLN02634 | PLN02634 | 6.0e-101 | 96 | 398 | 310 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 2.0e-106 | 99 | 394 | 297 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 3.0e-124 | 97 | 395 | 306 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 0 | 23 | 399 | 381 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAB71446.1 | 0 | 18 | 399 | 16 | 391 | Similar to Prunus pectinesterase (gb |
GenBank | ABN08648.1 | 0 | 10 | 395 | 9 | 388 | Pectinesterase [Medicago truncatula] |
RefSeq | NP_172023.1 | 0 | 18 | 399 | 16 | 393 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002323171.1 | 0 | 69 | 395 | 51 | 376 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002521065.1 | 0 | 27 | 395 | 26 | 392 | Pectinesterase-1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 97 | 395 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 5.99756e-43 | 98 | 395 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 3e-16 | 126 | 366 | 62 | 339 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.000000000000001 | 93 | 388 | 1 | 334 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.000000000000001 | 93 | 388 | 1 | 334 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |