| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10010343m |
| Family | GH28 |
| Protein Properties | Length: 470 Molecular Weight: 51370.5 Isoelectric Point: 8.1401 |
| Chromosome | Chromosome/Scaffold: 16 Start: 3175162 End: 3177657 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 88 | 428 | 0 |
| GGVQLIVPPGKWLTGSFNLTSHFTLFIQQGATILASQDEFEYPMMPPLPSYGDARFASLIYGSNLTDVVITGNKGTINGQGKSWWVKYRGGGFKSISRPL LIEIIFSENIQISDINLIDSPMWNVHPVYCKNVIVRNIKIDAPIDSPNTDGINPDSCTNTIIEDCSVTSGDDCIAVKSGIDQFGIATAIPTQQLSIRRLT CVSPDSAGIAIGSEMSGGIKDVRIEDVTLINTQSAIRVKTAIGRGGYVKDIFARRFTMKTMKYVFWITGSYKLHPIGFDPKALPEIRNINYRDMTAENVT MSARLEGIKNDPFTGICMSNVSIALSPTTKKLQWNCTDVAG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 470 Download |
| MEVFVEISNS KMKMIQISLC ILVVLTIFGF PMMESRIESK KGIEYQAINC RKHNAVLTDF 60 GAVGDGKTSN TKAFREAISK LTPLAADGGV QLIVPPGKWL TGSFNLTSHF TLFIQQGATI 120 LASQDEFEYP MMPPLPSYGD ARFASLIYGS NLTDVVITGN KGTINGQGKS WWVKYRGGGF 180 KSISRPLLIE IIFSENIQIS DINLIDSPMW NVHPVYCKNV IVRNIKIDAP IDSPNTDGIN 240 PDSCTNTIIE DCSVTSGDDC IAVKSGIDQF GIATAIPTQQ LSIRRLTCVS PDSAGIAIGS 300 EMSGGIKDVR IEDVTLINTQ SAIRVKTAIG RGGYVKDIFA RRFTMKTMKY VFWITGSYKL 360 HPIGFDPKAL PEIRNINYRD MTAENVTMSA RLEGIKNDPF TGICMSNVSI ALSPTTKKLQ 420 WNCTDVAGVT SRVKPEPCSL LPDKGTKMDC AFPVDKIPIE SVVLNKCYA* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 4.0e-27 | 7 | 438 | 451 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-30 | 57 | 410 | 364 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 1.0e-30 | 57 | 338 | 295 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-33 | 147 | 426 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 3.0e-58 | 55 | 346 | 320 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC63679.1 | 0 | 14 | 469 | 1 | 466 | putative polygalacturonase [Arabidopsis thaliana] |
| GenBank | ABK28510.1 | 0 | 6 | 469 | 4 | 477 | unknown [Arabidopsis thaliana] |
| RefSeq | NP_179968.2 | 0 | 6 | 469 | 4 | 477 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_190464.1 | 0 | 14 | 468 | 1 | 468 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002327490.1 | 0 | 44 | 469 | 21 | 450 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 38 | 421 | 5 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 38 | 421 | 5 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 38 | 421 | 5 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 38 | 421 | 5 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.000000000000006 | 99 | 384 | 52 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
