| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10010625m |
| Family | GH19 |
| Protein Properties | Length: 274 Molecular Weight: 29637 Isoelectric Point: 5.0201 |
| Chromosome | Chromosome/Scaffold: 16 Start: 703180 End: 704492 |
| Description | homolog of carrot EP3-3 chitinase |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH19 | 72 | 273 | 0 |
| VAEIVTQDFFNGIINQAESSCAGNRFYSRGAFLGALDSYSRFGRIGSVDDSRREIASFFAHVTHETGHFCYIEEIEGASKDYCDENATQYPCNPNKGYYG RGPIQLSWNFNYGPAGTAIGFDGLNAPETVATDPVISFKTALWYWTNRVQPVISQGFGATIRAINGALECDGANTATVQARVRYYTDYCRQLGVDPGNNL TC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 274 Download |
| MLTHTISKSI SIVTILLALQ AFYTKTKAQN CGCSSELCCS QFGFCGNTSD YCGVGCQQGP 60 CFAPPPANDV SVAEIVTQDF FNGIINQAES SCAGNRFYSR GAFLGALDSY SRFGRIGSVD 120 DSRREIASFF AHVTHETGHF CYIEEIEGAS KDYCDENATQ YPCNPNKGYY GRGPIQLSWN 180 FNYGPAGTAI GFDGLNAPET VATDPVISFK TALWYWTNRV QPVISQGFGA TIRAINGALE 240 CDGANTATVQ ARVRYYTDYC RQLGVDPGNN LTC* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| smart00270 | ChtBD1 | 7.0e-7 | 33 | 59 | 27 | + Chitin binding domain. | ||
| pfam00187 | Chitin_bind_1 | 2.0e-7 | 27 | 61 | 35 | + Chitin recognition protein. | ||
| cd00442 | lysozyme_like | 3.0e-9 | 162 | 241 | 80 | + lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides. | ||
| pfam00182 | Glyco_hydro_19 | 5.0e-95 | 75 | 273 | 232 | + Chitinase class I. | ||
| cd00325 | chitinase_glyco_hydro_19 | 4.0e-102 | 76 | 273 | 230 | + Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004568 | chitinase activity |
| GO:0006032 | chitin catabolic process |
| GO:0008061 | chitin binding |
| GO:0016998 | cell wall macromolecule catabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACM45716.1 | 0 | 7 | 273 | 3 | 272 | class IV chitinase [Pyrus pyrifolia] |
| EMBL | CAA74930.1 | 0 | 1 | 273 | 1 | 274 | class IV chitinase [Arabidopsis thaliana] |
| RefSeq | NP_191010.1 | 0 | 1 | 273 | 1 | 273 | ATEP3; chitinase [Arabidopsis thaliana] |
| RefSeq | XP_002326039.1 | 0 | 16 | 273 | 1 | 258 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002330662.1 | 0 | 29 | 273 | 31 | 275 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3hbh_A | 0 | 71 | 273 | 1 | 204 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 3hbe_X | 0 | 71 | 273 | 1 | 204 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 3hbd_A | 0 | 71 | 273 | 1 | 204 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |
| PDB | 2z37_D | 0 | 72 | 273 | 2 | 237 | A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module (Bjchi3) |
| PDB | 2z37_C | 0 | 72 | 273 | 2 | 237 | A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module (Bjchi3) |
