| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10013501m |
| Family | GH28 |
| Protein Properties | Length: 457 Molecular Weight: 49451 Isoelectric Point: 7.4969 |
| Chromosome | Chromosome/Scaffold: 2 Start: 4793914 End: 4796159 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 76 | 424 | 0 |
| EACKVEGSTLLVPSGSTFLVGPVSFLGKECKENIVFQLEGKIIAPTSSSAWGSGLLQWIEFKSLKGITIKGKGIIDGRGSVWWNKSPDYDPVDESESITR NDMMKDQLSTKMPRTKPTALRFYGSNGVTVNGITIQNSPQTHLKFDNCISIQVSDFTTSSPGDSPNTDGIHLQNSQDAVIYRSTLACGDDCISIQTGCSN IYIHDVDCGPGHGISIGGLGKEKTKACVSNITVRDVTMHETTNGVRIKSWQGGSGSVKQIMFSNIQVSEVANPIIIDQYYCDGGGCHNDTSAVAVSNINY INIKGTYTKEPVRFACSESLPCTGISLSTIELKPATEKASLRDPFCWEA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 457 Download |
| MYRVTLKCLA LKFLLLISLF SSRFRTCDAR QSVYWKGNRR SIAEGESSGT INVLDYGAKG 60 DGTSDDTKAF EDAWKEACKV EGSTLLVPSG STFLVGPVSF LGKECKENIV FQLEGKIIAP 120 TSSSAWGSGL LQWIEFKSLK GITIKGKGII DGRGSVWWNK SPDYDPVDES ESITRNDMMK 180 DQLSTKMPRT KPTALRFYGS NGVTVNGITI QNSPQTHLKF DNCISIQVSD FTTSSPGDSP 240 NTDGIHLQNS QDAVIYRSTL ACGDDCISIQ TGCSNIYIHD VDCGPGHGIS IGGLGKEKTK 300 ACVSNITVRD VTMHETTNGV RIKSWQGGSG SVKQIMFSNI QVSEVANPII IDQYYCDGGG 360 CHNDTSAVAV SNINYINIKG TYTKEPVRFA CSESLPCTGI SLSTIELKPA TEKASLRDPF 420 CWEAHGELKT KTLPPIQCLK TQKSPGAASK SYNDAC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 4.0e-65 | 47 | 440 | 402 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 3.0e-66 | 52 | 407 | 361 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 2.0e-67 | 41 | 408 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 2.0e-75 | 46 | 411 | 370 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-92 | 53 | 435 | 387 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD46483.1 | 0 | 6 | 440 | 8 | 426 | polygalacturonase PG1 [Glycine max] |
| GenBank | ACU24545.1 | 0 | 6 | 440 | 8 | 426 | unknown [Glycine max] |
| DDBJ | BAH56488.1 | 0 | 4 | 456 | 3 | 510 | polygalacturonase 1 [Prunus persica] |
| RefSeq | NP_196969.1 | 0 | 1 | 456 | 1 | 435 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002521450.1 | 0 | 21 | 444 | 22 | 458 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 7e-24 | 81 | 355 | 38 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 1e-21 | 142 | 388 | 72 | 298 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-21 | 142 | 388 | 72 | 298 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-21 | 142 | 388 | 72 | 298 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-21 | 142 | 388 | 72 | 298 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
