| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10013641m |
| Family | GH28 |
| Protein Properties | Length: 425 Molecular Weight: 46053.1 Isoelectric Point: 8.946 |
| Chromosome | Chromosome/Scaffold: 2 Start: 5780781 End: 5782703 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 69 | 410 | 0 |
| SKRNKRLLVPLGKTFMIKPLTFVGPCKSSSISFLIKGNLVAPGYTWYAGRYPSWISFDSINGLVVTGGGTIDGRGSVWWGNVQHRPTAMHFNNCNGLRMS NLRHLNSPRNHVGLSCSENIKVSGLKMNAPGDSPNTDGIDISNCRGVEIRDSVIATGDDCIAINSGSSFINITGIFCGPGHGISIGSLGENGYFATVEEV RVKNCTLRNTTNGVRIKTYENGSGYARKISFEDINMIASENPIIIEQNYHDWGKNGEVSFEDSNYQSCHFNHLYKTQSSGNGRGVKVSNVRYTRILGSSA SDKAITLNCDADLGCVDIVMDHVNMVSATSGREVSASCKNVR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 425 Download |
| MRRSSFFIVS LMVCLFQISK SGAHDNAKNG FESHRRSISV TSFGAVGDGK TDDTKAFLKA 60 WEGVCNGGSK RNKRLLVPLG KTFMIKPLTF VGPCKSSSIS FLIKGNLVAP GYTWYAGRYP 120 SWISFDSING LVVTGGGTID GRGSVWWGNV QHRPTAMHFN NCNGLRMSNL RHLNSPRNHV 180 GLSCSENIKV SGLKMNAPGD SPNTDGIDIS NCRGVEIRDS VIATGDDCIA INSGSSFINI 240 TGIFCGPGHG ISIGSLGENG YFATVEEVRV KNCTLRNTTN GVRIKTYENG SGYARKISFE 300 DINMIASENP IIIEQNYHDW GKNGEVSFED SNYQSCHFNH LYKTQSSGNG RGVKVSNVRY 360 TRILGSSASD KAITLNCDAD LGCVDIVMDH VNMVSATSGR EVSASCKNVR GIYFNSMVSC 420 LKKH* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 3.0e-85 | 4 | 413 | 421 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 9.0e-88 | 37 | 408 | 383 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-94 | 35 | 399 | 376 | + Probable polygalacturonase | ||
| PLN03010 | PLN03010 | 1.0e-107 | 39 | 411 | 375 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 2.0e-110 | 37 | 412 | 378 | + Probable polygalacturonase At3g15720 | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAY21049.1 | 0 | 37 | 421 | 29 | 396 | PGN [Glycine max] |
| GenBank | ABC75354.1 | 0 | 40 | 421 | 25 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| RefSeq | NP_195292.2 | 0 | 34 | 411 | 20 | 376 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_197222.1 | 0 | 1 | 422 | 1 | 420 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002515526.1 | 0 | 32 | 421 | 21 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 2e-22 | 131 | 409 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-22 | 131 | 409 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-22 | 131 | 409 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-22 | 131 | 409 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 2e-22 | 131 | 409 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
