| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10013901m |
| Family | CE8 |
| Protein Properties | Length: 365 Molecular Weight: 39500.3 Isoelectric Point: 8.42 |
| Chromosome | Chromosome/Scaffold: 2 Start: 2353793 End: 2355466 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 72 | 353 | 0 |
| VNKKGGEFTTLTDALKSVPAGNTKRVIIKMGPGEYREKVTIDRNKPFITLMGQPNAMPIISFDGTAAKYGTVDSASLIILSDYFMAVNIVVKNTAPMPDG KTKGAQALSMRISGNKAAFYNCKFYGFQDTICDDTGNHFFKDCYVEGTFDFIFGSGTSMYLGTQLHVVGDGIRVITAHAGKSAEEKSGYSFVHCKVTGDG NGIYLGRAWMSHPKVVYAYTEMTSVVNPSGWQENKMPAHDKTVFYGEYKCSGPGSHKAKRVPFTQDIDATEANRFLSLGYIQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 365 Download |
| MGYTNVSILL VAALVVVFVS PMVLADDTTP IPEAKPQVEQ WFKTNVGPLA SRKGTLDPAL 60 VAAEAEPRII NVNKKGGEFT TLTDALKSVP AGNTKRVIIK MGPGEYREKV TIDRNKPFIT 120 LMGQPNAMPI ISFDGTAAKY GTVDSASLII LSDYFMAVNI VVKNTAPMPD GKTKGAQALS 180 MRISGNKAAF YNCKFYGFQD TICDDTGNHF FKDCYVEGTF DFIFGSGTSM YLGTQLHVVG 240 DGIRVITAHA GKSAEEKSGY SFVHCKVTGD GNGIYLGRAW MSHPKVVYAY TEMTSVVNPS 300 GWQENKMPAH DKTVFYGEYK CSGPGSHKAK RVPFTQDIDA TEANRFLSLG YIQGSAWLLP 360 PPAL* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02432 | PLN02432 | 4.0e-83 | 69 | 358 | 291 | + putative pectinesterase |
| PLN02304 | PLN02304 | 1.0e-85 | 69 | 360 | 302 | + probable pectinesterase |
| PLN02634 | PLN02634 | 1.0e-85 | 68 | 363 | 305 | + probable pectinesterase |
| PLN02682 | PLN02682 | 3.0e-102 | 68 | 360 | 302 | + pectinesterase family protein |
| PLN02665 | PLN02665 | 0 | 26 | 364 | 341 | + pectinesterase family protein |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG52566.1 | 0 | 22 | 364 | 1 | 338 | AC010675_14 putative pectin methylesterase; 8433-9798 [Arabidopsis thaliana] |
| GenBank | AAM65347.1 | 0 | 22 | 364 | 1 | 342 | pectin methyl-esterase-like protein [Arabidopsis thaliana] |
| EMBL | CAB87930.1 | 0 | 22 | 364 | 1 | 342 | pectin methyl-esterase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_177152.2 | 0 | 1 | 364 | 1 | 361 | PPME1; pectinesterase [Arabidopsis thaliana] |
| RefSeq | NP_568181.1 | 0 | 1 | 364 | 1 | 361 | pectinesterase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 2e-33 | 67 | 358 | 7 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 2e-31 | 77 | 358 | 13 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 1e-19 | 76 | 350 | 15 | 335 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 1e-19 | 76 | 350 | 15 | 335 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 1e-19 | 76 | 350 | 15 | 335 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
