Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10016093m |
Family | PL1 |
Protein Properties | Length: 526 Molecular Weight: 56829.7 Isoelectric Point: 7.2311 |
Chromosome | Chromosome/Scaffold: 2 Start: 1177926 End: 1181997 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 169 | 390 | 0 |
WIVFSGDMGIRLKHELIIGSYKTIDGRGTNVQITGHGCLTIQQVSHVIIHNVHIHHCKPSGNTLVASSPTHVGFRGVSDGDGISVSASHHIWVDHCSLGY CMDGLIDVILASTAVTISNNYFYHHDEVMLLGHDDRFKVFGFDQFNPKSLIIWAILKRYTADSGMQVTIAFNHFGEGLVQRMPRCRHGYIHVVNNDFTAW QMYAIGGSANPTINSQGNRYTA |
Full Sequence |
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Protein Sequence Length: 526 Download |
MVAHKRINNP QQPTYICIIL FCLLVSLSHL GRASSSSSTS TSTSTSFFNL SLPHQHPFPE 60 DVVLNVQRKL NDSLYRRNLL TYQQDGDTTA SAPIPSCITG NPIDDCWRCD PNWSENRQRL 120 ADCSIGFGQG TLGGKGGRFY LVTDSSDNDA ANPIPGTLRH AVIQPEPLWI VFSGDMGIRL 180 KHELIIGSYK TIDGRGTNVQ ITGHGCLTIQ QVSHVIIHNV HIHHCKPSGN TLVASSPTHV 240 GFRGVSDGDG ISVSASHHIW VDHCSLGYCM DGLIDVILAS TAVTISNNYF YHHDEVMLLG 300 HDDRFKVFGF DQFNPKSLII WAILKRYTAD SGMQVTIAFN HFGEGLVQRM PRCRHGYIHV 360 VNNDFTAWQM YAIGGSANPT INSQGNRYTA PIDPNAKQVT KRVDTNEKHW EKWNWRTEGD 420 VMVNGAFFVP SGDGVSPAFA RATSVQAKAA AIIDQLTVNA GVFGDPSGRN GQGGGFPGIT 480 GGGGTITRGY SKGGPGGGGG SDSDSDDGLF SMIFGSNTSA AVALRP |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-19 | 170 | 386 | 232 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-53 | 181 | 388 | 230 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 6.0e-60 | 175 | 392 | 229 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL24172.1 | 0 | 176 | 526 | 1 | 327 | putative pectate lyase [Arabidopsis thaliana] |
RefSeq | NP_196051.2 | 0 | 1 | 526 | 1 | 496 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002268818.1 | 0 | 44 | 520 | 22 | 461 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316399.1 | 0 | 16 | 466 | 6 | 414 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002534016.1 | 0 | 16 | 521 | 7 | 463 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 101 | 462 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 101 | 462 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-18 | 120 | 388 | 2 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.0000000000003 | 184 | 408 | 128 | 350 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1jta_A | 0.000000004 | 179 | 389 | 78 | 288 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |