y
Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10016680m |
Family | GH28 |
Protein Properties | Length: 435 Molecular Weight: 46812.9 Isoelectric Point: 9.113 |
Chromosome | Chromosome/Scaffold: 10 Start: 11394293 End: 11396453 |
Description | polygalacturonase abscission zone A. thaliana |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 91 | 419 | 0 |
WKKACSSNGAVNLLVPKEKTYLLKSIRLTGPCKSILTVQIFGTLSASQKRSDYKDPSKWITFDGVNSLSVDGGTSGTVEGNGETWWQNSCKRSNAKSCSS KAPTALTFYNSNNLRVNNLRVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTRNIQVSKSIIGTGDDCISIESGSQNVRINDLTCGPGHGI SIGSLGDDNSKAFVSGVIVDGARLSGTDNGVRIKTYQGGSGTASNIVFQNIQMENVKNPIIIDQDYCDKSKCTEQKSAVQVKNVVYRNIRGTSASDMAIT FNCSKNYPCQGLVLDKVNIKGGEASCSNA |
Full Sequence |
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Protein Sequence Length: 435 Download |
MARCCKLLTG FLLWALLMLS WCEASRSRVD IYDHSNGRLK SDSIIKRRDD ITHLKSFMRA 60 SSRPPATVSV SDFGARGDGK TDDTQAFVNA WKKACSSNGA VNLLVPKEKT YLLKSIRLTG 120 PCKSILTVQI FGTLSASQKR SDYKDPSKWI TFDGVNSLSV DGGTSGTVEG NGETWWQNSC 180 KRSNAKSCSS KAPTALTFYN SNNLRVNNLR VRNAQQIQIS IEKCSNVQVS NVVVTAPADS 240 PNTDGIHITN TRNIQVSKSI IGTGDDCISI ESGSQNVRIN DLTCGPGHGI SIGSLGDDNS 300 KAFVSGVIVD GARLSGTDNG VRIKTYQGGS GTASNIVFQN IQMENVKNPI IIDQDYCDKS 360 KCTEQKSAVQ VKNVVYRNIR GTSASDMAIT FNCSKNYPCQ GLVLDKVNIK GGEASCSNAN 420 VMDKGAVLPQ CKST* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-84 | 69 | 421 | 361 | + polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-100 | 67 | 429 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 6.0e-111 | 95 | 421 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-126 | 49 | 409 | 366 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 0 | 1 | 431 | 431 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC02763.1 | 0 | 1 | 434 | 1 | 426 | putative polygalacturonase [Arabidopsis thaliana] |
GenBank | AAL84942.1 | 0 | 1 | 434 | 1 | 433 | At2g41850/T11A7.5 [Arabidopsis thaliana] |
EMBL | CAC05657.1 | 0 | 1 | 434 | 1 | 434 | endopolygalacturonase [Brassica napus] |
RefSeq | NP_191310.1 | 0 | 1 | 431 | 1 | 430 | ADPG1; polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_850359.1 | 0 | 1 | 434 | 1 | 433 | PGAZAT (POLYGALACTURONASE ABSCISSION ZONE A. THALIANA); polygalacturonase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 1e-23 | 92 | 418 | 15 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-23 | 92 | 418 | 15 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 1e-23 | 92 | 418 | 15 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 1e-23 | 92 | 418 | 15 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 1e-23 | 92 | 418 | 15 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |