| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10017738m |
| Family | GH28 |
| Protein Properties | Length: 404 Molecular Weight: 43958.4 Isoelectric Point: 9.7034 |
| Chromosome | Chromosome/Scaffold: 10 Start: 10736660 End: 10738391 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 57 | 390 | 0 |
| SACRRVSSSSKIYVPKGTFYLGGVEFVGPCKNKIEFVIDGTLLAPANPRDIKQDTWINFRYVNNLYISGSGTLDGQGKQSWPLNDCHKNTNCPKLAMTMG FAFVNNSRINGITSLNSKMGHFNFFSVHHFNITGVTITAPDNSPNTDGLKFGSSSHIHISNTHIGTGDDCIAILSGTTNMDISNVKCGPGHGISVGSLGK NKDEKDVKDLIVRDTIFNGTSDGIRIKTWESSASKIVVSNFVYENIQMINVGKPINIDQKYCPHPPCEKKGESHVQIQNLKLRNIYGTSKNKVAVNLQCS KSFPCKNVELIDINLKHNGVKAGSSTAVCKNVDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 404 Download |
| MACIVFAFKA LCLSLLFITV ASTRPTNRPK VFNVRRYGAI PDGKTDNANA FTNIWKSACR 60 RVSSSSKIYV PKGTFYLGGV EFVGPCKNKI EFVIDGTLLA PANPRDIKQD TWINFRYVNN 120 LYISGSGTLD GQGKQSWPLN DCHKNTNCPK LAMTMGFAFV NNSRINGITS LNSKMGHFNF 180 FSVHHFNITG VTITAPDNSP NTDGLKFGSS SHIHISNTHI GTGDDCIAIL SGTTNMDISN 240 VKCGPGHGIS VGSLGKNKDE KDVKDLIVRD TIFNGTSDGI RIKTWESSAS KIVVSNFVYE 300 NIQMINVGKP INIDQKYCPH PPCEKKGESH VQIQNLKLRN IYGTSKNKVA VNLQCSKSFP 360 CKNVELIDIN LKHNGVKAGS STAVCKNVDG FASGKMVPKH CLG* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 7.0e-72 | 30 | 402 | 380 | + polygalacturonase | ||
| PLN02155 | PLN02155 | 2.0e-76 | 1 | 402 | 405 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 3.0e-78 | 3 | 402 | 407 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-84 | 64 | 388 | 325 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 6.0e-110 | 32 | 401 | 371 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD17391.1 | 0 | 1 | 402 | 1 | 401 | putative polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_175003.1 | 0 | 1 | 402 | 1 | 403 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_179147.1 | 0 | 1 | 402 | 1 | 403 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_179148.1 | 0 | 1 | 399 | 1 | 400 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_179149.2 | 0 | 1 | 402 | 1 | 403 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-19 | 110 | 366 | 100 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 0.000000000000001 | 74 | 344 | 6 | 304 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 2iq7_G | 0.00000000000001 | 128 | 388 | 79 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.00000000000001 | 128 | 388 | 79 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.00000000000001 | 128 | 388 | 79 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
