| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10017763m |
| Family | GH28 |
| Protein Properties | Length: 410 Molecular Weight: 44848.6 Isoelectric Point: 7.297 |
| Chromosome | Chromosome/Scaffold: 10 Start: 7183438 End: 7184873 |
| Description | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 62 | 397 | 0 |
| EACQWSGGKSTVYIPLGTFYLSQVTFSGPCKSSITFIIKGTLSAPRDPNVIKQEEWIIFKYVDYLTVTGGGLLDGQGSYSWPLNDCNKNPNCRALAMNMG FAFVRSSRINGLRSINSKMGHFNLYSVEDFNITGVTVTAPGDSPNTDGIKIGRSKDMHIFNVTIGTGDDCIAILDGNTNLDISNVRCGPGHGISVGSLGR YKDEKNVEGLTVRDSVFNGTTDGLRIKTWAKSISQISVSNFLYDNIQMINVGNPIVIDQQYCPHGQCDSSGEYNSHVQIKDVKYSRIWGNSTSKEALKMQ CSKTFPCQDVELSNINLSYSGLDGLATALCENVGGS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 410 Download |
| MAARFLMLCA SSLLFFLAAV SSSSPTNEYH SDEKKVFDVR NYRARGDGRW DNAYAFTQAW 60 NEACQWSGGK STVYIPLGTF YLSQVTFSGP CKSSITFIIK GTLSAPRDPN VIKQEEWIIF 120 KYVDYLTVTG GGLLDGQGSY SWPLNDCNKN PNCRALAMNM GFAFVRSSRI NGLRSINSKM 180 GHFNLYSVED FNITGVTVTA PGDSPNTDGI KIGRSKDMHI FNVTIGTGDD CIAILDGNTN 240 LDISNVRCGP GHGISVGSLG RYKDEKNVEG LTVRDSVFNG TTDGLRIKTW AKSISQISVS 300 NFLYDNIQMI NVGNPIVIDQ QYCPHGQCDS SGEYNSHVQI KDVKYSRIWG NSTSKEALKM 360 QCSKTFPCQD VELSNINLSY SGLDGLATAL CENVGGSVRG KIVPDDCRI* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 6.0e-79 | 39 | 404 | 372 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 6.0e-83 | 36 | 407 | 375 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 8.0e-86 | 34 | 407 | 382 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-96 | 67 | 394 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-124 | 37 | 407 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF71796.1 | 0 | 34 | 407 | 32 | 410 | AC013430_5 F3F9.9 [Arabidopsis thaliana] |
| RefSeq | NP_175003.1 | 0 | 1 | 407 | 4 | 402 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_175004.1 | 0 | 1 | 401 | 4 | 396 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_177961.2 | 0 | 34 | 407 | 32 | 402 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_180874.1 | 0 | 1 | 409 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 0.00000000000001 | 126 | 394 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.00000000000001 | 126 | 394 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.00000000000001 | 126 | 394 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.00000000000001 | 126 | 394 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 0.00000000000001 | 126 | 394 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
