| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10018548m |
| Family | GH28 |
| Protein Properties | Length: 447 Molecular Weight: 48552 Isoelectric Point: 8.1098 |
| Chromosome | Chromosome/Scaffold: 9 Start: 171552 End: 173908 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 78 | 411 | 0 |
| KAACSSKSKTRILVPENCSCLVRPIDLSGPCKARLTLQISGTIIAPDDPDAWEGLNLRKWIYFHGVSRFTVEGGGTVNGMGQEWWRSSCKHNHSNPCRGA PTALTFHKCKNLRVENLSVIDSQQMHIAFTSCRRVTISGLKVIAPASSPNTDGIHISASRGIVIDNTTVRTGDDCVSIVKNSSQISISNIVCGPGHGISI GSIGKSKSWEEVKDVTVDTAFISDTANGVRIKTWQGGNGLVSKIIFRNINMKNVSNPIIIDQYYCDSRKPCANQTSAVTIEKISFVHVVGTSASKQAIKI SCSDTSPCRNIHLQDIDLEPSNDDGFTESFCWEA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 447 Download |
| MSYSCNVVVP NRFLLLVVVV LSLALTANAN YFESLLELPR RQSRSTRPRS ERVLHVGHFG 60 AKGNGFDDDT KAFADAWKAA CSSKSKTRIL VPENCSCLVR PIDLSGPCKA RLTLQISGTI 120 IAPDDPDAWE GLNLRKWIYF HGVSRFTVEG GGTVNGMGQE WWRSSCKHNH SNPCRGAPTA 180 LTFHKCKNLR VENLSVIDSQ QMHIAFTSCR RVTISGLKVI APASSPNTDG IHISASRGIV 240 IDNTTVRTGD DCVSIVKNSS QISISNIVCG PGHGISIGSI GKSKSWEEVK DVTVDTAFIS 300 DTANGVRIKT WQGGNGLVSK IIFRNINMKN VSNPIIIDQY YCDSRKPCAN QTSAVTIEKI 360 SFVHVVGTSA SKQAIKISCS DTSPCRNIHL QDIDLEPSND DGFTESFCWE AYGSSSGQVY 420 PPPCLSDETS FLEQSVHSGI TSVSYL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 1.0e-84 | 53 | 426 | 375 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 7.0e-90 | 56 | 424 | 371 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-95 | 81 | 396 | 316 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 1.0e-103 | 56 | 396 | 343 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 0 | 32 | 445 | 414 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD55489.1 | 0 | 26 | 446 | 25 | 459 | AC009322_29 Similar to polygalacturonases [Arabidopsis thaliana] |
| GenBank | ABM67700.1 | 0 | 14 | 445 | 16 | 445 | polygalacturonase [Citrus sinensis] |
| RefSeq | NP_565232.1 | 0 | 26 | 446 | 25 | 444 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002299601.1 | 0 | 18 | 438 | 16 | 441 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002517603.1 | 0 | 32 | 438 | 12 | 418 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 7e-23 | 148 | 341 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 6e-21 | 144 | 383 | 69 | 320 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 2iq7_G | 7e-21 | 72 | 387 | 9 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 7e-21 | 72 | 387 | 9 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 7e-21 | 72 | 387 | 9 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
