Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10018650m |
Family | GH28 |
Protein Properties | Length: 405 Molecular Weight: 44277.7 Isoelectric Point: 9.9646 |
Chromosome | Chromosome/Scaffold: 9 Start: 950122 End: 951569 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 59 | 390 | 0 |
KEACQWKGNPSVYVPFGTFYLGGVTFTGPCKSRISFIIKGTLLAPKEANAIKQDTWIIFKYVDYLTVSGGGTLDGQGSYSWRLNDCSRNPNCRPLPMNIG FQFVRFSRINRIKSINSKMGHINFFAVEYFEVSRVSIRAPGDSPNTDGIKIGSSNHMKIHHVDIGTGDDCIAILAGTTDLDIYRVTCGPGHGISVGSLGR YKNEKSVQGLIVRDSIFRGTTNGVRIKTWAPSASRNLISNFLFKNLQMINVENPINIDQQYCPNNQCRKTSHSQVQIQNVKFKNIWGTSTSKVAVKLQCS KMAPCTDVELFGVNLVHRGPDGPATAWCENVA |
Full Sequence |
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Protein Sequence Length: 405 Download |
MASTVCGFTL ILFIAAVTSG VSAAASTSFA GRKIFNVRKY GARSDGKTDN AIAFTKAWKE 60 ACQWKGNPSV YVPFGTFYLG GVTFTGPCKS RISFIIKGTL LAPKEANAIK QDTWIIFKYV 120 DYLTVSGGGT LDGQGSYSWR LNDCSRNPNC RPLPMNIGFQ FVRFSRINRI KSINSKMGHI 180 NFFAVEYFEV SRVSIRAPGD SPNTDGIKIG SSNHMKIHHV DIGTGDDCIA ILAGTTDLDI 240 YRVTCGPGHG ISVGSLGRYK NEKSVQGLIV RDSIFRGTTN GVRIKTWAPS ASRNLISNFL 300 FKNLQMINVE NPINIDQQYC PNNQCRKTSH SQVQIQNVKF KNIWGTSTSK VAVKLQCSKM 360 APCTDVELFG VNLVHRGPDG PATAWCENVA GWTRGNIFPP SCIH* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 4.0e-85 | 36 | 399 | 370 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-87 | 32 | 402 | 378 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 1.0e-91 | 34 | 404 | 372 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-93 | 72 | 389 | 318 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-123 | 34 | 402 | 371 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF71796.1 | 0 | 1 | 404 | 1 | 412 | AC013430_5 F3F9.9 [Arabidopsis thaliana] |
RefSeq | NP_173158.1 | 0 | 7 | 403 | 11 | 401 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_177961.2 | 0 | 1 | 404 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_179147.1 | 0 | 23 | 404 | 19 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_180874.1 | 0 | 1 | 402 | 1 | 402 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-16 | 127 | 373 | 115 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.00000000000003 | 123 | 389 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000000003 | 123 | 389 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000000000003 | 123 | 389 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.00000000000003 | 123 | 389 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |