Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10018672m |
Family | GH28 |
Protein Properties | Length: 398 Molecular Weight: 43406.7 Isoelectric Point: 8.4724 |
Chromosome | Chromosome/Scaffold: 9 Start: 11156116 End: 11159845 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 56 | 386 | 0 |
NACGLEDSVIIYVPKGRYLVSRELRFEGESCRSRETTLRIDGTLIGPQNYRLLGKEENWFSFIGVHNITVLGGSFDAKGSTLWSCKAKGLNCPEGATTLR FMDSYNVRIKGILSLNSQLFHIAINRCRNIKIEDIRIIAPDDSPNTDGVHIQLSTDIEVRNASIKTGDDCISIGPGTKNLMVDGITCGPGHGISIGSLAK NLEEQGVKNVTVKKAVFVRTDNGLRIKSWPRHSNGFVERVRFLGARMVNVSYPILIDQNYCPGDSYCPSQESGIKINDVIYSGITGTSATTVAIKMDCSE RFPCTGIRMQAINLSYYGKEAKTSCTNVSGK |
Full Sequence |
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Protein Sequence Length: 398 Download |
MASSLSYVHV FRIVITVIMS HFGQLDARTS LNVLNFGAKP NGLVDSTKAF SDAWDNACGL 60 EDSVIIYVPK GRYLVSRELR FEGESCRSRE TTLRIDGTLI GPQNYRLLGK EENWFSFIGV 120 HNITVLGGSF DAKGSTLWSC KAKGLNCPEG ATTLRFMDSY NVRIKGILSL NSQLFHIAIN 180 RCRNIKIEDI RIIAPDDSPN TDGVHIQLST DIEVRNASIK TGDDCISIGP GTKNLMVDGI 240 TCGPGHGISI GSLAKNLEEQ GVKNVTVKKA VFVRTDNGLR IKSWPRHSNG FVERVRFLGA 300 RMVNVSYPIL IDQNYCPGDS YCPSQESGIK INDVIYSGIT GTSATTVAIK MDCSERFPCT 360 GIRMQAINLS YYGKEAKTSC TNVSGKQLGL VLPNGCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 1.0e-79 | 58 | 383 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-87 | 29 | 396 | 378 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 3.0e-88 | 25 | 393 | 375 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-88 | 31 | 397 | 375 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 1.0e-126 | 11 | 397 | 388 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK28449.1 | 0 | 21 | 397 | 21 | 397 | unknown [Arabidopsis thaliana] |
RefSeq | NP_176735.1 | 0 | 21 | 397 | 21 | 397 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002262690.1 | 0 | 32 | 397 | 33 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002315106.1 | 0 | 10 | 397 | 11 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002524365.1 | 0 | 27 | 397 | 19 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 2e-22 | 97 | 383 | 42 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-22 | 97 | 383 | 42 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 2e-22 | 97 | 383 | 42 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 2e-22 | 97 | 383 | 42 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 2e-22 | 97 | 383 | 42 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY281549 | 317 | 30 | 345 | 0 |
JZ191937 | 299 | 99 | 397 | 0 |
JZ194028 | 288 | 93 | 380 | 0 |
DY287541 | 300 | 30 | 328 | 0 |
JZ192826 | 286 | 97 | 382 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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