| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10019484m |
| Family | GH28 |
| Protein Properties | Length: 337 Molecular Weight: 35980.1 Isoelectric Point: 7.4338 |
| Chromosome | Chromosome/Scaffold: 9 Start: 164400 End: 166083 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 3 | 309 | 0 |
| RVYVPAGKVFLLNSLHFTGPCTLKPLLFTVDGEVIAQSDPKKWQKGENGVIPWLIFDQVEGLVISGRGLLDGQGKGWWDIHCRDHPGPMMTFSNCGSVTL TSLRFRNSAQAHVLVMGSQNVNINDIKIASPEASPNTDGVHITSSSAVSITHSDIATGDDCVSIGDQVNNVNVTFVNCGPGHGVSIGSLGRGGTNVAVED IRVWHVNFTGTTNGARIKTWPGGTGYVRGIEFFDIRFSAVQNPIIIDQFYGCVSKCAETRKAVHIEKVRYMKMSGTSATKVAMKLECSGESVPCSNVFMR DIDLSPA | |||
| Full Sequence |
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| Protein Sequence Length: 337 Download |
| MARVYVPAGK VFLLNSLHFT GPCTLKPLLF TVDGEVIAQS DPKKWQKGEN GVIPWLIFDQ 60 VEGLVISGRG LLDGQGKGWW DIHCRDHPGP MMTFSNCGSV TLTSLRFRNS AQAHVLVMGS 120 QNVNINDIKI ASPEASPNTD GVHITSSSAV SITHSDIATG DDCVSIGDQV NNVNVTFVNC 180 GPGHGVSIGS LGRGGTNVAV EDIRVWHVNF TGTTNGARIK TWPGGTGYVR GIEFFDIRFS 240 AVQNPIIIDQ FYGCVSKCAE TRKAVHIEKV RYMKMSGTSA TKVAMKLECS GESVPCSNVF 300 MRDIDLSPAI GIDSLSSLCS FVLGSAQGIV RPSSCL* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-69 | 6 | 306 | 313 | + polygalacturonase ADPG | ||
| PLN03010 | PLN03010 | 1.0e-75 | 4 | 311 | 309 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 1.0e-76 | 6 | 309 | 307 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-77 | 6 | 307 | 307 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 6.0e-81 | 2 | 336 | 344 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD55472.1 | 0 | 1 | 336 | 31 | 381 | AC009322_12 Similar to polygalacturonases [Arabidopsis thaliana] |
| EMBL | CBI15273.1 | 0 | 5 | 333 | 63 | 384 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI36307.1 | 0 | 6 | 336 | 69 | 402 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_178131.1 | 0 | 1 | 336 | 1 | 336 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002267182.1 | 0 | 5 | 333 | 63 | 390 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-21 | 66 | 252 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.00000000000003 | 71 | 307 | 79 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.00000000000003 | 71 | 307 | 79 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.00000000000003 | 71 | 307 | 79 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.00000000000003 | 71 | 307 | 79 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DT769246 | 253 | 92 | 333 | 0 |
| DR050772 | 297 | 27 | 306 | 0 |
| DT746124 | 248 | 97 | 333 | 0 |
| DT768232 | 247 | 102 | 336 | 0 |
| JZ191937 | 288 | 55 | 336 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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