y
Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10019797m |
Family | GH28 |
Protein Properties | Length: 468 Molecular Weight: 50440.4 Isoelectric Point: 4.7774 |
Chromosome | Chromosome/Scaffold: 9 Start: 4437787 End: 4439937 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 93 | 422 | 0 |
ACSAPRSVLLVPQGRHYLVNATNFNGPCQENLIVQIDGTIVAPDDPSEWDPRFQRNWLRFSKLQGVVFQGNGVIDGSGTKWWAASCKKNKSNPCIGAPTA VTIDSSSAVYVRGLTIRNSQQMHLSIARSNTVRISRVMVTSPGDSPNTDGIHITASTNVVIQDCKISTGDDCVSIVNESARIKMKRIYCGPGHGISIGSL GRGNSTATVTAIVLDTAFLKNTTNGLRIKTWQGGNGYVKGVRFENVEMQDVANPIIIDQFYCDSPSTCQNQTSAVHITEVMYRNITGTTKSAKAIKFACS DAVPCSHIVLNNVNLEGKDKTVEAYCNSAE |
Full Sequence |
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Protein Sequence Length: 468 Download |
MNQLFTVSLL ALLMVTSCGA SGETPYRELD ILGELENLDV PQDDIDDDVA FFDFSSITSQ 60 FSGKNLVNLD SFGAAGDGVS DDTQAFTSAW KIACSAPRSV LLVPQGRHYL VNATNFNGPC 120 QENLIVQIDG TIVAPDDPSE WDPRFQRNWL RFSKLQGVVF QGNGVIDGSG TKWWAASCKK 180 NKSNPCIGAP TAVTIDSSSA VYVRGLTIRN SQQMHLSIAR SNTVRISRVM VTSPGDSPNT 240 DGIHITASTN VVIQDCKIST GDDCVSIVNE SARIKMKRIY CGPGHGISIG SLGRGNSTAT 300 VTAIVLDTAF LKNTTNGLRI KTWQGGNGYV KGVRFENVEM QDVANPIIID QFYCDSPSTC 360 QNQTSAVHIT EVMYRNITGT TKSAKAIKFA CSDAVPCSHI VLNNVNLEGK DKTVEAYCNS 420 AEGFGYGVVH PSADCLDSHD NKSIDQTQYF TESVIVGEES ENAHDEL* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-86 | 62 | 421 | 365 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 5.0e-88 | 61 | 437 | 385 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-100 | 94 | 421 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 9.0e-114 | 3 | 431 | 434 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-144 | 62 | 438 | 379 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC98004.1 | 0 | 15 | 467 | 15 | 457 | Similar to gb |
RefSeq | NP_173760.2 | 0 | 15 | 467 | 16 | 460 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_177207.1 | 0 | 1 | 467 | 1 | 468 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002299032.1 | 0 | 19 | 461 | 18 | 452 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525360.1 | 0 | 1 | 467 | 1 | 505 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-22 | 162 | 353 | 115 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 6e-21 | 150 | 409 | 63 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-21 | 150 | 409 | 63 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 6e-21 | 150 | 409 | 63 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 6e-21 | 150 | 409 | 63 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |