| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10020017m |
| Family | GT41 |
| Protein Properties | Length: 900 Molecular Weight: 99802.1 Isoelectric Point: 6.2163 |
| Chromosome | Chromosome/Scaffold: 13 Start: 5722470 End: 5727073 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT41 | 359 | 850 | 0 |
| PNFAQSLNNLGVVYTVQGKMDAAASMIEKAILANPTYAEAFNNLGVLYRDAGNITMAIDAYEECLKIDPDSRNAGQNRLLAMNYINEGLDDKLFEAHRDW GWRFTRLHPQYTSWDNLKDPERPITIGYISPDFFTHSVSYFIEAPLTHHDYTKYKVVVYSAVVKADAKTYRFRDKVLKKGGVWKDVYGIDEKKIASMVRE DKIDILVELTGHTANNKLGTMACRPAPIQVTWIGYPNTTGLPTVDYRITDSLADPPDTKQKQVEELVRLPDCFLCYTPSPEAGPVCPTPALSNGFVTFGS FNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSIRQRFLTTLEQLGLESKRVDLLPLILFNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVP CVTMAGSVHAHNVGVSLLSKVGLGHLVAKNEDEYVQLSVDLASDVTALSKLRMSLRDLMAGSPVCNGPSFAVALESAYRNMWKNYCKGEVPS | |||
| Full Sequence |
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| Protein Sequence Length: 900 Download |
| MVGLGDNAER ERSPVVENGF SNGSRSSPTT DVLSPSRKAT QGNDTLSYAN ILRARNKFAD 60 ALALYETMLE KDSKNVEAHI GKGICLQTQN KGNLAFDCFS EAIRLDPHNA CALTHCGILH 120 KEEGRLVEAA ESYQKALMAD ASYKPAAECL AIVLTDLGTS LKLAGNTQEG IQKYYEALKI 180 DPHYAPAYYN LGVVYSEMMQ YDSALSCYEK AALERPMYAE AYCNMGVIYK NRGDLEMAIT 240 CYERCLAVSP NFEIAKNNMA IALTDLGTKV KLEGDVSQGV AYYKKALYYN WHYADAMYNL 300 GVAYGEMLKF DMAIVFYELA FHFNPHCAEA CNNLGVLYKD RDNLDKAVEC YQMALSIKPN 360 FAQSLNNLGV VYTVQGKMDA AASMIEKAIL ANPTYAEAFN NLGVLYRDAG NITMAIDAYE 420 ECLKIDPDSR NAGQNRLLAM NYINEGLDDK LFEAHRDWGW RFTRLHPQYT SWDNLKDPER 480 PITIGYISPD FFTHSVSYFI EAPLTHHDYT KYKVVVYSAV VKADAKTYRF RDKVLKKGGV 540 WKDVYGIDEK KIASMVREDK IDILVELTGH TANNKLGTMA CRPAPIQVTW IGYPNTTGLP 600 TVDYRITDSL ADPPDTKQKQ VEELVRLPDC FLCYTPSPEA GPVCPTPALS NGFVTFGSFN 660 NLAKITPKVL QVWARILCAV PNSRLVVKCK PFCCDSIRQR FLTTLEQLGL ESKRVDLLPL 720 ILFNHDHMQA YSLMDISLDT FPYAGTTTTC ESLYMGVPCV TMAGSVHAHN VGVSLLSKVG 780 LGHLVAKNED EYVQLSVDLA SDVTALSKLR MSLRDLMAGS PVCNGPSFAV ALESAYRNMW 840 KNYCKGEVPS SRRMEMLQKE VQEDPLISKD LGPSRLNVTG EATPSLKANG SAPVPSSLQ* 900 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR02917 | PEP_TPR_lipo | 1.0e-17 | 55 | 428 | 376 | + putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. | ||
| TIGR02917 | PEP_TPR_lipo | 2.0e-19 | 46 | 424 | 379 | + putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. | ||
| TIGR02917 | PEP_TPR_lipo | 2.0e-25 | 46 | 428 | 411 | + putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. | ||
| COG3914 | Spy | 4.0e-89 | 311 | 843 | 562 | + Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0005515 | protein binding |
| GO:0042802 | identical protein binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAX46402.1 | 0 | 10 | 898 | 12 | 905 | putative SPINDLY protein [Rosa luciae] |
| RefSeq | NP_187761.1 | 0 | 1 | 898 | 1 | 899 | SPY (SPINDLY); protein N-acetylglucosaminyltransferase/ protein binding / transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_002281883.1 | 0 | 10 | 898 | 12 | 902 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002323412.1 | 0 | 10 | 894 | 12 | 905 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002530535.1 | 0 | 10 | 898 | 12 | 906 | o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4gz6_D | 1e-35 | 260 | 632 | 9 | 386 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
| PDB | 4gz6_D | 7e-24 | 654 | 849 | 524 | 715 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
| PDB | 4gz6_D | 2e-17 | 107 | 263 | 6 | 155 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
| PDB | 4gz6_D | 0.000000000000007 | 154 | 301 | 12 | 152 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
| PDB | 4gz6_D | 0.000000006 | 35 | 192 | 2 | 152 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DY295408 | 401 | 424 | 821 | 0 |
| GT041789 | 337 | 339 | 675 | 0 |
| GT041789 | 109 | 166 | 272 | 0.00000000000003 |
| GT041789 | 125 | 230 | 352 | 0.00001 |
| GT041789 | 61 | 641 | 701 | 0.58 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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