| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10020091m |
| Family | GT5 |
| Protein Properties | Length: 806 Molecular Weight: 88971.6 Isoelectric Point: 7.3796 |
| Chromosome | Chromosome/Scaffold: 13 Start: 9149844 End: 9153297 |
| Description | starch synthase 2 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT5 | 315 | 798 | 0 |
| NVILVAAECAPFSKTGGLGDVAGALPKALARRGHRVMVVVPRYAEYAEAKDVGIRKRYKVAGQDMEVMYFHAYIDGVDFVFIESPVFRHLSNNIYGGNRL DILKRMVLFCKAAVEVPWYVPCGGVCYGDGNLAFIANDWHTALLPVYLKAYYRDHGIMKYTRSVLVIHNIAHQGRGPVDDFSYVDLPSHYLDSFKLYDPV GGEHFNIFAAGLKAADRVLTVSHGYSWEVKTLEGGWGLHNIINENDWKFRGIVNGIDTKEWNPKFDLHLHSDEYTNYSLETLHIGKPQCKAALQKELGLP VRPDVPLIGFIGRLDHQKGVDLIAEAVPWMMSQDVQLVMLGTGRPDLEEVLRQMEHQYRDKARGWVGFSVRTAHRITAGADILLMPSRFEPCGLNQLYAM NYGTIPVVHAVGGLRDTVQQFDPYSETGLGWTFDSAKAGKLIHALGNCLLTYREYKESWEGLQRRGMTQDLSWDNAAEKYEEVL | |||
| Full Sequence |
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| Protein Sequence Length: 806 Download |
| MASVAESSLP LLCQIKSQRR VTSSTTLRNS SVVRVSSPDF ASGSLSFRGR SFVLGHRWKF 60 VRCVEATGPD SSEAASGDEQ EDALQATIEK SKKVLDMQRN LLHQIAERRK LVSSIKESTP 120 NLDDHIACSK EDFGSSVNAN TDATRKEKMD GDGSGSFSPS SYGKSSLNKE PEAKTLSPGT 180 GSPKKSKQSS APVKSSSTPS PEKPSVVATN GKPWSSVVAS SIDPPYKPSS TMTSSEKTSD 240 PVTSPGNPTK SHAGAFWSDP LPSYLTKTPE TSSIQTEKYM ETKKEKTHEE ASSDTNEPVR 300 NEEKPPPLAG ANVMNVILVA AECAPFSKTG GLGDVAGALP KALARRGHRV MVVVPRYAEY 360 AEAKDVGIRK RYKVAGQDME VMYFHAYIDG VDFVFIESPV FRHLSNNIYG GNRLDILKRM 420 VLFCKAAVEV PWYVPCGGVC YGDGNLAFIA NDWHTALLPV YLKAYYRDHG IMKYTRSVLV 480 IHNIAHQGRG PVDDFSYVDL PSHYLDSFKL YDPVGGEHFN IFAAGLKAAD RVLTVSHGYS 540 WEVKTLEGGW GLHNIINEND WKFRGIVNGI DTKEWNPKFD LHLHSDEYTN YSLETLHIGK 600 PQCKAALQKE LGLPVRPDVP LIGFIGRLDH QKGVDLIAEA VPWMMSQDVQ LVMLGTGRPD 660 LEEVLRQMEH QYRDKARGWV GFSVRTAHRI TAGADILLMP SRFEPCGLNQ LYAMNYGTIP 720 VVHAVGGLRD TVQQFDPYSE TGLGWTFDSA KAGKLIHALG NCLLTYREYK ESWEGLQRRG 780 MTQDLSWDNA AEKYEEVLVA AKYQW* 840 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 8.0e-85 | 314 | 802 | 513 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 2.0e-135 | 314 | 796 | 493 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 3.0e-169 | 314 | 797 | 494 | + glycogen synthase; Provisional | ||
| TIGR02095 | glgA | 0 | 314 | 801 | 492 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 315 | 798 | 495 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABV25894.1 | 0 | 8 | 805 | 6 | 751 | starch synthase isoform II [Manihot esculenta] |
| GenBank | ACL98480.1 | 0 | 5 | 805 | 15 | 774 | starch synthase IIa-2 precursor [Glycine max] |
| RefSeq | NP_186767.1 | 0 | 1 | 805 | 1 | 792 | AtSS2 (starch synthase 2); transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_002278470.1 | 0 | 20 | 805 | 35 | 772 | PREDICTED: similar to starch synthase [Vitis vinifera] |
| RefSeq | XP_002531856.1 | 0 | 1 | 805 | 1 | 754 | starch synthase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 314 | 799 | 10 | 509 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
| PDB | 3vue_A | 0 | 314 | 799 | 10 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 314 | 797 | 1 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 314 | 804 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 314 | 804 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO777841 | 319 | 488 | 806 | 0 |
| HO777841 | 194 | 303 | 496 | 0 |
| HO781048 | 394 | 413 | 806 | 0 |
| HO781048 | 38 | 376 | 413 | 0.005 |
| HO777841 | 57 | 63 | 116 | 0.19 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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