Basic Information | |
---|---|
Species | Thellungiella halophila |
Cazyme ID | Thhalv10020444m |
Family | AA1 |
Protein Properties | Length: 552 Molecular Weight: 61841.4 Isoelectric Point: 9.3981 |
Chromosome | Chromosome/Scaffold: 13 Start: 5035156 End: 5037754 |
Description | SKU5 similar 13 |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
AA1 | 43 | 503 | 0 |
IPQQVILINGQFPGPNLNSTSNNNIVINVFNNLDEPFLLTWSGLQHRKNSWQDGVAGTSCPIPAGTNFTYHFQPKDQIGSYFYYPSTSLHRFSGGFGGLR VNSRLLIPVPYADPEDDYTVLINDWYTKSHTALKNFLDSGRTLGSPDGVLINGKSGKVGGNNEPLFTMKPGKTYKYRICNVGFKSTLNFRIQGHKMKLVE MEGSHVIQNDYDSLDVHVGQCFAVLVTADQVAKNYYMVASTRFLKKEVSTVGVMSYEGSNVQASNELPKAPVGWAWSLNQFRSFRWNLTASAARPNPQGS YHYGKINITRTIKLANTKNLVNGKVRFGLNGVSHVDPETPLKLAEYFGLAEKVFKYNVIKDEPAAKITTLVVEPNVLNITFRTFVEIVFENHEKSMQSFN LDGYSFFNVASEPGRWTPEKRKNYNLLDAVSRHTVQVFPKSWSAILLTFDNAGMWNIRSEN |
Full Sequence |
---|
Protein Sequence Length: 552 Download |
MQGGKLLTVL VCIVSTVAMV NAGDPYFYYT WNVTYGTIAP LGIPQQVILI NGQFPGPNLN 60 STSNNNIVIN VFNNLDEPFL LTWSGLQHRK NSWQDGVAGT SCPIPAGTNF TYHFQPKDQI 120 GSYFYYPSTS LHRFSGGFGG LRVNSRLLIP VPYADPEDDY TVLINDWYTK SHTALKNFLD 180 SGRTLGSPDG VLINGKSGKV GGNNEPLFTM KPGKTYKYRI CNVGFKSTLN FRIQGHKMKL 240 VEMEGSHVIQ NDYDSLDVHV GQCFAVLVTA DQVAKNYYMV ASTRFLKKEV STVGVMSYEG 300 SNVQASNELP KAPVGWAWSL NQFRSFRWNL TASAARPNPQ GSYHYGKINI TRTIKLANTK 360 NLVNGKVRFG LNGVSHVDPE TPLKLAEYFG LAEKVFKYNV IKDEPAAKIT TLVVEPNVLN 420 ITFRTFVEIV FENHEKSMQS FNLDGYSFFN VASEPGRWTP EKRKNYNLLD AVSRHTVQVF 480 PKSWSAILLT FDNAGMWNIR SENWERRYLG QQMYVSVLSP EKSLRDEYNI PLNTNLCGIV 540 KGLPLPTPYT I* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02354 | PLN02354 | 0 | 1 | 551 | 552 | + copper ion binding / oxidoreductase | ||
PLN02835 | PLN02835 | 0 | 6 | 538 | 534 | + oxidoreductase | ||
PLN02991 | PLN02991 | 0 | 17 | 542 | 526 | + oxidoreductase | ||
PLN02792 | PLN02792 | 0 | 14 | 548 | 541 | + oxidoreductase | ||
PLN02168 | PLN02168 | 0 | 9 | 541 | 548 | + copper ion binding / pectinesterase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0005507 | copper ion binding |
GO:0016491 | oxidoreductase activity |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD10639.1 | 0 | 4 | 550 | 3 | 558 | putative pollen specific protein [Arabidopsis thaliana] |
RefSeq | NP_175953.1 | 0 | 1 | 550 | 1 | 553 | sks12 (SKU5 Similar 12); copper ion binding / oxidoreductase [Arabidopsis thaliana] |
RefSeq | NP_187948.1 | 0 | 1 | 551 | 1 | 551 | sks13 (SKU5 Similar 13); copper ion binding / oxidoreductase [Arabidopsis thaliana] |
RefSeq | NP_564697.1 | 0 | 4 | 550 | 3 | 549 | sks14 (SKU5 Similar 14); copper ion binding / oxidoreductase [Arabidopsis thaliana] |
RefSeq | XP_002299087.1 | 0 | 3 | 551 | 2 | 551 | hypothetical protein POPTRDRAFT_750403 [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1asq_B | 0 | 28 | 538 | 5 | 539 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1asq_A | 0 | 28 | 538 | 5 | 539 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1asp_B | 0 | 28 | 538 | 5 | 539 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1asp_A | 0 | 28 | 538 | 5 | 539 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1aso_B | 0 | 28 | 538 | 5 | 539 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |