| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10020501m |
| Family | GH28 |
| Protein Properties | Length: 527 Molecular Weight: 54408.5 Isoelectric Point: 8.9629 |
| Chromosome | Chromosome/Scaffold: 13 Start: 6886849 End: 6889093 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 172 | 508 | 0 |
| WKEACASASPSTILVPKGEYLVNNIEFKGPCKGPITFEVNGNLKAPPNWLGGGKPHCGWLEFEKLTDFTINGNGAIFDGQGAIAWKVNDCAKTGKCNTLP INIRFTGLTNSKIIGITSTNSKLFHMNIIDCKNVTFQNIGIDAPPESLNTDGIHIGRSNGVILRESKIRTGDDCISIGDGTENLLVENVECGPGHGIAIG SLGKYPNEQPVRGVTIRKTLIKNTDNGVRIKTWPGSPPGIASNILFDDITMDNVSTPILVDQVYCPHGTCKSQAPSKVKLSDVSFKNIRGTSASKVAVKL LCSPGVPCTNFAFADINLVHNGKEGPAVSACSNVKPV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 527 Download |
| MVDLRKAKTV FIGVLVFVAI TTANGAKFLR ETDDDDTPSA AAPLGQKITE KVKETGAKVK 60 ETAAPIGAKV KETAAPIGAE VKETAAPIGA KVKETAAPIG AKVAAGFKGM TGSNGPAAAP 120 LGARIAEGFK GSIAPIGAKL GFKGSGASID VKASGAKADG KTDDSGAFAA AWKEACASAS 180 PSTILVPKGE YLVNNIEFKG PCKGPITFEV NGNLKAPPNW LGGGKPHCGW LEFEKLTDFT 240 INGNGAIFDG QGAIAWKVND CAKTGKCNTL PINIRFTGLT NSKIIGITST NSKLFHMNII 300 DCKNVTFQNI GIDAPPESLN TDGIHIGRSN GVILRESKIR TGDDCISIGD GTENLLVENV 360 ECGPGHGIAI GSLGKYPNEQ PVRGVTIRKT LIKNTDNGVR IKTWPGSPPG IASNILFDDI 420 TMDNVSTPIL VDQVYCPHGT CKSQAPSKVK LSDVSFKNIR GTSASKVAVK LLCSPGVPCT 480 NFAFADINLV HNGKEGPAVS ACSNVKPVVS GKMVPPACTE VAKPGP* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 5.0e-72 | 147 | 515 | 373 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 2.0e-79 | 150 | 518 | 371 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 3.0e-80 | 155 | 518 | 373 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-106 | 180 | 506 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-117 | 143 | 519 | 378 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL32525.1 | 0 | 121 | 526 | 57 | 445 | polygalacturonase; pectinase [Arabidopsis thaliana] |
| EMBL | CAA11160.1 | 0 | 136 | 526 | 57 | 445 | polygalacturonase [Arabidopsis thaliana] |
| EMBL | CAA51033.1 | 0 | 136 | 526 | 57 | 444 | exopolygalacturonase [Arabidopsis thaliana] |
| EMBL | CAA51692.1 | 0 | 136 | 526 | 57 | 445 | exopolygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_188020.1 | 0 | 121 | 526 | 57 | 445 | exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 3e-20 | 173 | 505 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 3e-20 | 173 | 505 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 3e-20 | 173 | 505 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 3e-20 | 173 | 505 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 3e-20 | 173 | 505 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
