| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10020710m |
| Family | GH28 |
| Protein Properties | Length: 455 Molecular Weight: 48834.9 Isoelectric Point: 5.6871 |
| Chromosome | Chromosome/Scaffold: 13 Start: 3612388 End: 3615233 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 72 | 414 | 0 |
| KGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGATILASSDPSHWDIVSPLPSYGRGVELPGKRYRSLINGDNLLDVVITGDNGTFDGQGAAWWEWLESGTL NYSRPHIIEFVSSKHILISNLTFLNAPSVNIHPVYCSQVHIRKVLIETSVDSPYVLGVVPDSSDNVCVEDSTINVGHDAISLKSGWDQYGINYGRPTTTV HIRNLSLKSPTGAGISFGSEMSGGISDVTVELLSIRSSHVGVAFRTTRGRGGYIRNITISGVDFSGVETAIVADGHTGSHPDDKFDRDAIPVVTHIVMRN FTGEGIGLAGNFSGIGESPFTSICLADVHLKTSSESWICSNVS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 455 Download |
| MKMPVALVWL LAFTNLLIRG ESNNAICKKT FNLDPRPHSV SILEFGAVGD GKTLNTLAFQ 60 NAIFYLKSFA DKGGAQLYVP PGKWLTGSFN LTSHLTLFLE KGATILASSD PSHWDIVSPL 120 PSYGRGVELP GKRYRSLING DNLLDVVITG DNGTFDGQGA AWWEWLESGT LNYSRPHIIE 180 FVSSKHILIS NLTFLNAPSV NIHPVYCSQV HIRKVLIETS VDSPYVLGVV PDSSDNVCVE 240 DSTINVGHDA ISLKSGWDQY GINYGRPTTT VHIRNLSLKS PTGAGISFGS EMSGGISDVT 300 VELLSIRSSH VGVAFRTTRG RGGYIRNITI SGVDFSGVET AIVADGHTGS HPDDKFDRDA 360 IPVVTHIVMR NFTGEGIGLA GNFSGIGESP FTSICLADVH LKTSSESWIC SNVSGFSDDV 420 SPEPCEELTS SPSSCFAGGS IYGGDTVAQS YYTW* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 6.0e-16 | 36 | 425 | 418 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 9.0e-20 | 138 | 413 | 285 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 5.0e-24 | 37 | 413 | 396 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 3.0e-28 | 38 | 422 | 398 | + Probable polygalacturonase At3g15720 | ||
| COG5434 | PGU1 | 3.0e-49 | 20 | 352 | 355 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM62920.1 | 0 | 3 | 454 | 1 | 453 | polygalacturonase, putative [Arabidopsis thaliana] |
| DDBJ | BAA95779.1 | 0 | 3 | 454 | 1 | 453 | polygalacturonase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_188308.1 | 0 | 1 | 454 | 1 | 455 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002314352.1 | 0 | 16 | 434 | 15 | 435 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002328589.1 | 0 | 1 | 446 | 1 | 448 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 5e-32 | 38 | 398 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 5e-32 | 38 | 398 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 5e-32 | 38 | 398 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 5e-32 | 38 | 398 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.000000000000005 | 84 | 414 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
