| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10020740m |
| Family | GH28 |
| Protein Properties | Length: 442 Molecular Weight: 46915.1 Isoelectric Point: 4.8439 |
| Chromosome | Chromosome/Scaffold: 13 Start: 4032830 End: 4034992 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 37 | 366 | 0 |
| EVVCSGTGDGQLVVPAGMTFMLQPLNFQGSCKSTPVVVQILGNLVASSKGKWKGDKDQWILFTDIEGLVVEGGGEINGQGSSWWEHKGSRPTALKFKSCN NLRLSGITHVDSPMAHIHINQCNDVSISNLRINAPESSPNTDGIDVAASSNVIIQDCIIATGDDCIAINSGTSNIRISGIDCGPGHGISIGSLGKDGETA SVENVCVQNCNFRGTMNGARIKTWPGGSGYARMITFHGITLDNVENPIIIDQHYNNGGSEKTKDDKSSAVEVSKVMYSNFVGTSKSEYGVDFRCSQSVPC TDIFMRDVRIETATSGQGQVAQGQCLNVRG | |||
| Full Sequence |
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| Protein Sequence Length: 442 Download |
| MFILQIFTSS TALDVTQFGA IGDGVTDDSQ AFLKAWEVVC SGTGDGQLVV PAGMTFMLQP 60 LNFQGSCKST PVVVQILGNL VASSKGKWKG DKDQWILFTD IEGLVVEGGG EINGQGSSWW 120 EHKGSRPTAL KFKSCNNLRL SGITHVDSPM AHIHINQCND VSISNLRINA PESSPNTDGI 180 DVAASSNVII QDCIIATGDD CIAINSGTSN IRISGIDCGP GHGISIGSLG KDGETASVEN 240 VCVQNCNFRG TMNGARIKTW PGGSGYARMI TFHGITLDNV ENPIIIDQHY NNGGSEKTKD 300 DKSSAVEVSK VMYSNFVGTS KSEYGVDFRC SQSVPCTDIF MRDVRIETAT SGQGQVAQGQ 360 CLNVRGVSTL ALPGLECLAI STDMLSSAEL PEQTCALPQS VQPNTLPLQD PLWVYGSGGK 420 RLRVYSVVLT SFISLVIFVL G* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 7.0e-85 | 9 | 365 | 368 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 4.0e-87 | 9 | 351 | 355 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-93 | 9 | 385 | 388 | + Probable polygalacturonase | ||
| PLN03010 | PLN03010 | 8.0e-113 | 14 | 369 | 359 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 0 | 1 | 441 | 444 | + Probable polygalacturonase At3g15720 | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABC75354.1 | 0 | 13 | 378 | 23 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| RefSeq | NP_001078162.1 | 0 | 1 | 441 | 11 | 451 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_195292.2 | 0 | 14 | 369 | 25 | 379 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_566524.1 | 0 | 1 | 441 | 12 | 455 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002515526.1 | 0 | 13 | 379 | 28 | 393 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 6e-25 | 48 | 293 | 26 | 269 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 6e-25 | 48 | 293 | 26 | 269 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 6e-25 | 48 | 293 | 26 | 269 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 6e-25 | 48 | 293 | 26 | 269 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 6e-25 | 48 | 293 | 26 | 269 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DR353350 | 184 | 1 | 184 | 0 |
| EX027791 | 178 | 268 | 442 | 0 |
| DR369961 | 176 | 266 | 439 | 0 |
| EY474520 | 254 | 127 | 380 | 0 |
| CV536748 | 246 | 89 | 330 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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