| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10020758m |
| Family | GH28 |
| Protein Properties | Length: 438 Molecular Weight: 48325.1 Isoelectric Point: 8.7685 |
| Chromosome | Chromosome/Scaffold: 13 Start: 6845927 End: 6848754 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 91 | 426 | 0 |
| WEAACSSTGTVYVVVPKNRAYILKPVKFSGPCKSSLIVFKIYGKIEAWSDPSDYKERRHWIVFETVNNLRVEGGGRIDGNGNIWWPKSCKINPQLPCLGA PTAVTFVECKNLMVSNIRLENAQQMHMTFQDCENVKALRLMVTSPGDSPNTDGLHVTGTRNILIQDSIIRTGDDCISIVSGSENVRATGITCGPGHGISI GSLGEDNSEAYVSNVVVNKATLIGTTNGVRIKTWQGGHGMAKNIIFQDIIMKNVTNPIIINQDYCDRVESCPEQKSAVQVSNVLYKNIQGTSSRPVAVKF ECSKSIPCRGISMQNVRLVDQTQRDVSKASCSNVKL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 438 Download |
| MNQEILILLT ILLTSLRSCF SSYPFDHRYD PFLSSDIYHE TNHLHGDITR TRHMKNRHGY 60 APRSSPRAFN VNTFGAKANG NDDSQAFMKA WEAACSSTGT VYVVVPKNRA YILKPVKFSG 120 PCKSSLIVFK IYGKIEAWSD PSDYKERRHW IVFETVNNLR VEGGGRIDGN GNIWWPKSCK 180 INPQLPCLGA PTAVTFVECK NLMVSNIRLE NAQQMHMTFQ DCENVKALRL MVTSPGDSPN 240 TDGLHVTGTR NILIQDSIIR TGDDCISIVS GSENVRATGI TCGPGHGISI GSLGEDNSEA 300 YVSNVVVNKA TLIGTTNGVR IKTWQGGHGM AKNIIFQDII MKNVTNPIII NQDYCDRVES 360 CPEQKSAVQV SNVLYKNIQG TSSRPVAVKF ECSKSIPCRG ISMQNVRLVD QTQRDVSKAS 420 CSNVKLDTRG RVSPLCT* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 3.0e-96 | 64 | 425 | 367 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 2.0e-109 | 64 | 437 | 379 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-115 | 95 | 425 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 3.0e-138 | 58 | 434 | 383 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 5.0e-147 | 25 | 437 | 416 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC26512.1 | 0 | 5 | 436 | 18 | 458 | polygalacturonase precursor [Cucumis melo] |
| GenBank | AAF21207.1 | 0 | 1 | 437 | 1 | 438 | AC013483_31 putative polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_187454.2 | 0 | 1 | 437 | 1 | 439 | QRT2 (QUARTET 2); polygalacturonase [Arabidopsis thaliana] |
| RefSeq | XP_002313308.1 | 0 | 61 | 437 | 1 | 376 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002517823.1 | 0 | 18 | 436 | 22 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 7e-25 | 150 | 408 | 102 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 1e-17 | 144 | 421 | 55 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-17 | 144 | 421 | 55 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-17 | 144 | 421 | 55 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-17 | 144 | 421 | 55 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
