| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10020866m |
| Family | GH28 |
| Protein Properties | Length: 399 Molecular Weight: 42400.6 Isoelectric Point: 7.6917 |
| Chromosome | Chromosome/Scaffold: 13 Start: 6891890 End: 6893707 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 44 | 375 | 0 |
| TSACQAPAPSQVLIPKGEYKLGEIAMTGPCKSPVEITLQGTVKADGNMQGKERWVVFEKINGFKLNGGGIFDGEGNAAWRTNNCHKTFECKKLPISLRFD FVDNADIRDITSMDSKNFHINVISGKNMTFDNIKISAPAESPNTDGIHLGRCDGVKILNSKIATGDDCISVGDGMKNLLVEKVVCGPGHGISVGSLGRYG FEEDVAGVRVVNCTLVGTDNGLRIKTWPSAKCTTTASGIHFEDIILQNVSNPILIDQEYCPWNQCNKQKPSTIKLVDISFRKIRGTSGNKDAVKLLCSKG IPCENVEIGDINIEYKGADGPPTFQCSNVNPK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 399 Download |
| MGSYFGISTI LVLCLLGYSA NAEVFRVPGA PGSDITQALL KAFTSACQAP APSQVLIPKG 60 EYKLGEIAMT GPCKSPVEIT LQGTVKADGN MQGKERWVVF EKINGFKLNG GGIFDGEGNA 120 AWRTNNCHKT FECKKLPISL RFDFVDNADI RDITSMDSKN FHINVISGKN MTFDNIKISA 180 PAESPNTDGI HLGRCDGVKI LNSKIATGDD CISVGDGMKN LLVEKVVCGP GHGISVGSLG 240 RYGFEEDVAG VRVVNCTLVG TDNGLRIKTW PSAKCTTTAS GIHFEDIILQ NVSNPILIDQ 300 EYCPWNQCNK QKPSTIKLVD ISFRKIRGTS GNKDAVKLLC SKGIPCENVE IGDINIEYKG 360 ADGPPTFQCS NVNPKLVGTQ VPKACSGGSA VMAPGSSS* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 1.0e-73 | 29 | 385 | 367 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 6.0e-75 | 25 | 383 | 367 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 3.0e-75 | 33 | 385 | 358 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 7.0e-120 | 33 | 385 | 356 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-132 | 47 | 372 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM74219.1 | 0 | 1 | 397 | 1 | 397 | AF518563_1 putative pollen polygalacturonase [Brassica oleracea] |
| GenBank | AAP42648.1 | 0 | 1 | 397 | 1 | 397 | polygalacturonase [Brassica napus] |
| RefSeq | NP_187440.1 | 0 | 1 | 394 | 1 | 396 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | NP_187441.1 | 0 | 1 | 388 | 1 | 390 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| Swiss-Prot | P35337 | 0 | 1 | 395 | 1 | 395 | PGLR_BRANA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 0.000000000000008 | 45 | 372 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.000000000000008 | 45 | 372 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.000000000000008 | 45 | 372 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 0.000000000000008 | 45 | 372 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 0.000000000000008 | 45 | 372 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
