| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10020872m |
| Family | GH28 |
| Protein Properties | Length: 397 Molecular Weight: 42139.8 Isoelectric Point: 6.9425 |
| Chromosome | Chromosome/Scaffold: 13 Start: 6895154 End: 6896780 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 44 | 376 | 0 |
| TSACQSTSPSKVVIPKGEFKLGEIEMRGPCKAPVEITLQGTVKADGNTNHGKDKWVVFGNINGFKLNGGGAFDGEGNAAWRVNNCHKTFECKKLPISVRF DFVENAEIKDISSIDAKNFHINVLGAKNMTMDNIKITAPEDSPNTDGIHLGRSDGVKILNSFISTGDDCISVGDGMKNLHVEKVVCGPGHGISVGSLGRY GHEEDVSGIRVVNCTLQETDNGLRIKTWPSAACSTTASDIHFEDIIVKNVSNPILIDQEYCPWNQCNKQKASTIKLVNISFKNIRGTSGNKDAVKLLCSK GYPCQKVEIGDIDIAYSGADGPATFQCSNVSPQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 397 Download |
| MGAHFAVSTI LVLCLLGISA NAEVFTIGSS SGSDITQALL KAFTSACQST SPSKVVIPKG 60 EFKLGEIEMR GPCKAPVEIT LQGTVKADGN TNHGKDKWVV FGNINGFKLN GGGAFDGEGN 120 AAWRVNNCHK TFECKKLPIS VRFDFVENAE IKDISSIDAK NFHINVLGAK NMTMDNIKIT 180 APEDSPNTDG IHLGRSDGVK ILNSFISTGD DCISVGDGMK NLHVEKVVCG PGHGISVGSL 240 GRYGHEEDVS GIRVVNCTLQ ETDNGLRIKT WPSAACSTTA SDIHFEDIIV KNVSNPILID 300 QEYCPWNQCN KQKASTIKLV NISFKNIRGT SGNKDAVKLL CSKGYPCQKV EIGDIDIAYS 360 GADGPATFQC SNVSPQLLGS QSPKACSGPV TTTPQQ* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-76 | 33 | 384 | 359 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 2.0e-78 | 33 | 386 | 357 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 2.0e-78 | 33 | 386 | 360 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 6.0e-122 | 33 | 386 | 356 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-125 | 47 | 373 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABG38468.1 | 0 | 1 | 395 | 1 | 395 | pollen-expressed protein MF9c [Brassica oleracea] |
| GenBank | ABL63521.1 | 0 | 1 | 395 | 1 | 395 | pollen-specific protein MF9l [Brassica oleracea var. alboglabra] |
| GenBank | ABN13878.1 | 0 | 1 | 395 | 1 | 395 | polygalacturonase [Brassica rapa subsp. campestris] |
| EMBL | CAA05892.1 | 0 | 1 | 389 | 1 | 389 | polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_187439.1 | 0 | 1 | 389 | 1 | 389 | polygalacturonase 3 (PGA3) / pectinase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.00000000000005 | 111 | 303 | 115 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 0.000000000002 | 45 | 303 | 16 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.000000000002 | 45 | 303 | 16 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.000000000002 | 45 | 303 | 16 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 0.000000000002 | 45 | 303 | 16 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
