| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10020916m |
| Family | GH28 |
| Protein Properties | Length: 383 Molecular Weight: 40759.4 Isoelectric Point: 7.1472 |
| Chromosome | Chromosome/Scaffold: 13 Start: 6895154 End: 6896780 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 30 | 362 | 0 |
| TSACQSTSPSKVVIPKGEFKLGEIEMRGPCKAPVEITLQGTVKADGNTNHGKDKWVVFGNINGFKLNGGGAFDGEGNAAWRVNNCHKTFECKKLPISVRF DFVENAEIKDISSIDAKNFHINVLGAKNMTMDNIKITAPEDSPNTDGIHLGRSDGVKILNSFISTGDDCISVGDGMKNLHVEKVVCGPGHGISVGSLGRY GHEEDVSGIRVVNCTLQETDNGLRIKTWPSAACSTTASDIHFEDIIVKNVSNPILIDQEYCPWNQCNKQKASTIKLVNISFKNIRGTSGNKDAVKLLCSK GYPCQKVEIGDIDIAYSGADGPATFQCSNVSPQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 383 Download |
| MGAHFAVSTI LVLCLLGISA NAEALLKAFT SACQSTSPSK VVIPKGEFKL GEIEMRGPCK 60 APVEITLQGT VKADGNTNHG KDKWVVFGNI NGFKLNGGGA FDGEGNAAWR VNNCHKTFEC 120 KKLPISVRFD FVENAEIKDI SSIDAKNFHI NVLGAKNMTM DNIKITAPED SPNTDGIHLG 180 RSDGVKILNS FISTGDDCIS VGDGMKNLHV EKVVCGPGHG ISVGSLGRYG HEEDVSGIRV 240 VNCTLQETDN GLRIKTWPSA ACSTTASDIH FEDIIVKNVS NPILIDQEYC PWNQCNKQKA 300 STIKLVNISF KNIRGTSGNK DAVKLLCSKG YPCQKVEIGD IDIAYSGADG PATFQCSNVS 360 PQLLGSQSPK ACSGPVTTTP QQ* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-75 | 17 | 370 | 361 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-78 | 17 | 372 | 362 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 4.0e-79 | 17 | 372 | 359 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 7.0e-122 | 17 | 372 | 358 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 8.0e-127 | 33 | 359 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABG38468.1 | 0 | 1 | 381 | 1 | 395 | pollen-expressed protein MF9c [Brassica oleracea] |
| GenBank | ABL63521.1 | 0 | 1 | 381 | 1 | 395 | pollen-specific protein MF9l [Brassica oleracea var. alboglabra] |
| GenBank | ABN13878.1 | 0 | 1 | 381 | 1 | 395 | polygalacturonase [Brassica rapa subsp. campestris] |
| EMBL | CAA05892.1 | 0 | 1 | 375 | 1 | 389 | polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_187439.1 | 0 | 1 | 375 | 1 | 389 | polygalacturonase 3 (PGA3) / pectinase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.00000000000004 | 97 | 289 | 115 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 0.0000000000008 | 21 | 289 | 7 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.0000000000008 | 21 | 289 | 7 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.0000000000008 | 21 | 289 | 7 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 0.0000000000008 | 21 | 289 | 7 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
