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Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10020972m |
Family | PL1 |
Protein Properties | Length: 370 Molecular Weight: 40928.1 Isoelectric Point: 8.3679 |
Chromosome | Chromosome/Scaffold: 13 Start: 6473956 End: 6476125 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 100 | 278 | 0 |
VFDVSGTINLSSFVNVSSHKTVDGRGQRVKITGKGLRLKQCENVIICNLEFEGGVGPDADAIQIKPKSSNIWIDRCSLKNYHDGLIDITRESTDITVSRC HFMNHNKTMLIGADESHVTDRCIRVTIHHCFFDGTRQRHPRVRFAKIHLYNNYTRHWAIYAVGAGVESQIYSQCNIYEA |
Full Sequence |
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Protein Sequence Length: 370 Download |
MGNLHGLHRS HHAGETSNAH FPPSLAPPSS SSPSRPHMTT VEPYCHVDSS LRSLAGKAEG 60 FGRAAVGGLS GPICRVTSLA DEGPGSLREA CKRPDPLWIV FDVSGTINLS SFVNVSSHKT 120 VDGRGQRVKI TGKGLRLKQC ENVIICNLEF EGGVGPDADA IQIKPKSSNI WIDRCSLKNY 180 HDGLIDITRE STDITVSRCH FMNHNKTMLI GADESHVTDR CIRVTIHHCF FDGTRQRHPR 240 VRFAKIHLYN NYTRHWAIYA VGAGVESQIY SQCNIYEAGE KKTVFKYITE KAGDKEKPEA 300 GFIRSEGDWL LNGAKSCLSH NGERHVFSPT QHYSEWTVES PTEKLKNFMK HSTGWQNLPL 360 PPDQTTSTA* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00544 | Pec_lyase_C | 1.0e-41 | 100 | 274 | 195 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
COG3866 | PelB | 7.0e-48 | 48 | 341 | 316 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
smart00656 | Amb_all | 9.0e-68 | 102 | 279 | 190 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK93648.1 | 0 | 22 | 364 | 36 | 381 | unknown [Populus trichocarpa] |
GenBank | ABK96132.1 | 0 | 25 | 363 | 46 | 383 | unknown [Populus trichocarpa] |
RefSeq | NP_187565.1 | 0 | 1 | 369 | 1 | 378 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002309435.1 | 0 | 38 | 363 | 1 | 327 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002323433.1 | 0 | 38 | 364 | 1 | 328 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 9.99995e-41 | 48 | 314 | 15 | 307 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 9.99995e-41 | 48 | 314 | 15 | 307 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1vbl_A | 2e-28 | 112 | 276 | 127 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 3vmw_A | 5e-24 | 88 | 341 | 38 | 300 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 3vmv_A | 5e-24 | 88 | 341 | 38 | 300 | A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FY442268 | 278 | 1 | 278 | 0 |
EV547368 | 241 | 124 | 364 | 0 |
FY425270 | 241 | 124 | 364 | 0 |
DW066041 | 301 | 63 | 361 | 0 |
DY289690 | 307 | 39 | 341 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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