| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10023244m |
| Family | CBM22 |
| Protein Properties | Length: 930 Molecular Weight: 103745 Isoelectric Point: 6.6972 |
| Chromosome | Chromosome/Scaffold: 8 Start: 6190863 End: 6194482 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM22 | 42 | 181 | 1.8e-32 |
| NVIVNHDFSSGMHPWHPNCCEAFVVTEGSGVSHGVLDPSKCGSYVVVTNRKETWQGLEQDITSRVKPCCLYKVSATVAVSGPVQGLVEVMATLKLENQQS PTKYQFIAKTCVFKEKWVRLEGMFSLPNVPEKVVFYLEGP | |||
| CBM22 | 210 | 346 | 1.7e-32 |
| NIVVNPNFEDGLNNWSGRSCKLVLHDSMADGSIVPQSGKAFASATERTQNWNGIQQEITGKVQRKLVYEATALVRIYGNNVTNATVQATLWVQNPNQRDQ YIGIANVQATDKEWVQCKGKFFLNGSASRVVIYIEGP | |||
| CBM22 | 381 | 523 | 8.09951e-43 |
| NILTNSHLGDGTTNGWFSLGNCTLSVAEGSPRILPPMARDSLGPHEPLSGHYMLVTNRTQTWMGPAQMITDKLKLFLTYQVSVWVKVGSGVTSPQNVNVA LGIDSQWVNGGQVEINDDKWHEIGGSFRIEKQPSKALVYVQGP | |||
| GH10 | 581 | 848 | 0 |
| QIRNSFPVGTCISRSNIDNEDFVDFFLKNFNWAVFANELKWYWTEPEQGKLNYQDADDMLNLCSSNNIETRGHCIFWEVQATVQQWIQNMNQSELNNAVQ NRLTGLLNRYKGKFKHYDVNNEMLHGSFYQDKLGKDIRVNMFKTAHQLDPSATLFVNDYHIEDGCDPRSCPEKYIEHILDLQEKGAPVGGIGVQGHIDSP VGPIVCSALDKLGILGLPIWFTEMDVSSINEHVRGDDLEVMMWEAFGHPAVEGIMLWGFWEFFMARDN | |||
| Full Sequence |
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| Protein Sequence Length: 930 Download |
| MKRFTVCCFS NRIHKSRNRN QEKLTKQNNN NVASNLGSNL TNVIVNHDFS SGMHPWHPNC 60 CEAFVVTEGS GVSHGVLDPS KCGSYVVVTN RKETWQGLEQ DITSRVKPCC LYKVSATVAV 120 SGPVQGLVEV MATLKLENQQ SPTKYQFIAK TCVFKEKWVR LEGMFSLPNV PEKVVFYLEG 180 PSPGIDLLIQ YVTIKPELEQ EEHVTMEDEN IVVNPNFEDG LNNWSGRSCK LVLHDSMADG 240 SIVPQSGKAF ASATERTQNW NGIQQEITGK VQRKLVYEAT ALVRIYGNNV TNATVQATLW 300 VQNPNQRDQY IGIANVQATD KEWVQCKGKF FLNGSASRVV IYIEGPPPGT DILLNSLTLK 360 HAEKIPPLPV PSIENPAFGV NILTNSHLGD GTTNGWFSLG NCTLSVAEGS PRILPPMARD 420 SLGPHEPLSG HYMLVTNRTQ TWMGPAQMIT DKLKLFLTYQ VSVWVKVGSG VTSPQNVNVA 480 LGIDSQWVNG GQVEINDDKW HEIGGSFRIE KQPSKALVYV QGPSSGVDLM VAGLQIFPVD 540 RLARVKHLRR QCDKIRKRDV ILKFSGADAS KLSGATVKVR QIRNSFPVGT CISRSNIDNE 600 DFVDFFLKNF NWAVFANELK WYWTEPEQGK LNYQDADDML NLCSSNNIET RGHCIFWEVQ 660 ATVQQWIQNM NQSELNNAVQ NRLTGLLNRY KGKFKHYDVN NEMLHGSFYQ DKLGKDIRVN 720 MFKTAHQLDP SATLFVNDYH IEDGCDPRSC PEKYIEHILD LQEKGAPVGG IGVQGHIDSP 780 VGPIVCSALD KLGILGLPIW FTEMDVSSIN EHVRGDDLEV MMWEAFGHPA VEGIMLWGFW 840 EFFMARDNSH LVNAEGDVNE AGKRLLAVKK DWLSHANGHI DQNGAFPFRG YHGNYAVEVI 900 SSSSQKVLKT FVVEKGDYAQ VITVDLQGL* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 1.0e-16 | 42 | 183 | 144 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| pfam02018 | CBM_4_9 | 8.0e-18 | 380 | 525 | 152 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 1.0e-32 | 564 | 807 | 257 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 9.0e-79 | 582 | 869 | 308 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 9.0e-80 | 619 | 865 | 268 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG50641.1 | 0 | 16 | 929 | 4 | 915 | AC082643_5 xylan endohydrolase isoenzyme, putative [Arabidopsis thaliana] |
| RefSeq | NP_176133.1 | 0 | 16 | 929 | 4 | 917 | RXF12; endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | XP_002301133.1 | 0 | 31 | 926 | 153 | 1049 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 42 | 543 | 2 | 491 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 209 | 536 | 1 | 314 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1i1x_A | 2e-28 | 609 | 807 | 39 | 241 | A Chain A, Crystal Structure Of Rcb Domain Of Irsp53 |
| PDB | 1i1w_A | 2e-28 | 609 | 807 | 39 | 241 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2bnj_A | 4e-28 | 609 | 807 | 39 | 241 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| PDB | 1k6a_A | 1e-27 | 617 | 807 | 47 | 241 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |
| PDB | 1gor_A | 1e-27 | 617 | 807 | 47 | 241 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EB442796 | 298 | 409 | 706 | 0 |
| EX570690 | 295 | 632 | 926 | 0 |
| GO850973 | 328 | 507 | 834 | 0 |
| EB442796 | 120 | 240 | 359 | 0.00000002 |
| EB442796 | 115 | 82 | 196 | 0.0000001 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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