| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10023404m |
| Family | GH28 |
| Protein Properties | Length: 539 Molecular Weight: 59309.7 Isoelectric Point: 7.4976 |
| Chromosome | Chromosome/Scaffold: 8 Start: 4008766 End: 4011455 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 146 | 495 | 0 |
| SACKVEASTMIIPSDYIFLVGPISFSGPYCQPNIVFQLDGMIVAPTDSETWGRGLMWWIEFTKLKAITIQGKGVIDGRGTVWWQQDYPFNYPIDDDFKLI VPLNNSVQERPPMPIRSELNGMPSIKPTALRFYGSIDVTVTGITIQNSPQCHLKFDNCVQVLVHDVNVSSPGDSPNTDGIHLQNTRDVLIYSSTLACGDD CISIQTGCSNVYVHGVNCGPGHGISIGSLGKDSTKACVSNITVRDVVMHNTMTGVRIKTWQGGVGSVKGIVFSNIQLTEVQLPIVIDQFYCDHSKCKNQT SAVAVEGVTYEKIRGTYTVKPVHFACSDSFPCIDVQLSGIELKPVQQQYH | |||
| Full Sequence |
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| Protein Sequence Length: 539 Download |
| MITRESQRLR SITMMILMTI LVWSVTLETC IARKGRHWRH HHSRSSSSSL SDSLSSKKAK 60 SHENSHNNSH SYKSKPKPKQ KPKLKTSPPK SGSPVLPQPP QVQPPPPSPL PLQPLEGSQE 120 FNVLDFGAKG DGMTDDTEAF ESAWASACKV EASTMIIPSD YIFLVGPISF SGPYCQPNIV 180 FQLDGMIVAP TDSETWGRGL MWWIEFTKLK AITIQGKGVI DGRGTVWWQQ DYPFNYPIDD 240 DFKLIVPLNN SVQERPPMPI RSELNGMPSI KPTALRFYGS IDVTVTGITI QNSPQCHLKF 300 DNCVQVLVHD VNVSSPGDSP NTDGIHLQNT RDVLIYSSTL ACGDDCISIQ TGCSNVYVHG 360 VNCGPGHGIS IGSLGKDSTK ACVSNITVRD VVMHNTMTGV RIKTWQGGVG SVKGIVFSNI 420 QLTEVQLPIV IDQFYCDHSK CKNQTSAVAV EGVTYEKIRG TYTVKPVHFA CSDSFPCIDV 480 QLSGIELKPV QQQYHMYEPF CWKTFGELNS PTVPPIDCLQ IGKPARNGVH TDHDICVL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 8.0e-77 | 117 | 488 | 378 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-80 | 152 | 487 | 337 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03010 | PLN03010 | 8.0e-85 | 119 | 487 | 374 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-88 | 122 | 488 | 371 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 4.0e-104 | 121 | 515 | 399 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF17670.1 | 0 | 1 | 536 | 1 | 542 | AC009398_19 F20B24.8 [Arabidopsis thaliana] |
| GenBank | AAL31197.1 | 0 | 71 | 537 | 2 | 474 | At1g60590/F8A5_12 [Arabidopsis thaliana] |
| GenBank | ABK95830.1 | 0 | 1 | 536 | 1 | 516 | unknown [Populus trichocarpa] |
| RefSeq | NP_563875.6 | 0 | 1 | 536 | 1 | 532 | polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_564758.2 | 0 | 1 | 537 | 1 | 540 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 1e-20 | 212 | 487 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-20 | 212 | 487 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-20 | 212 | 487 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-20 | 212 | 487 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 1e-20 | 212 | 487 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| ES800057 | 352 | 159 | 508 | 0 |
| EX073104 | 287 | 153 | 438 | 0 |
| EV525679 | 276 | 249 | 523 | 0 |
| FE695613 | 287 | 226 | 511 | 0 |
| EV540947 | 237 | 300 | 536 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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