Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10023834m |
Family | CE8 |
Protein Properties | Length: 328 Molecular Weight: 36136 Isoelectric Point: 8.8472 |
Chromosome | Chromosome/Scaffold: 8 Start: 7486934 End: 7489144 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 3 | 287 | 0 |
IVVDHSGKGNFKTIQSAINSIPSGNSHWIKIFIKEGVYNEKVIIPKNKPKIQMEGNKASTTIIQYNDGGKASLSTTVRVSAEFFVAINITFKNTYNPDKP MIPYREIKVAPAVILAADKAAFFGCEFFSIQDTIGDLGGRHYFQKCHIKGGIDFIWGGGQSIYQNCVIDVLGVISTTAKEEEANKGLMAGFITAQGRETE QDTSGFVFNGCSITGVGKAFLGRAYRGYSRVIFYNTNMADVIVAQGWDSWSYPRQVDKLTYAEVNCKGPGAKKQGRVAWEKNLSD |
Full Sequence |
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Protein Sequence Length: 328 Download |
KTIVVDHSGK GNFKTIQSAI NSIPSGNSHW IKIFIKEGVY NEKVIIPKNK PKIQMEGNKA 60 STTIIQYNDG GKASLSTTVR VSAEFFVAIN ITFKNTYNPD KPMIPYREIK VAPAVILAAD 120 KAAFFGCEFF SIQDTIGDLG GRHYFQKCHI KGGIDFIWGG GQSIYQNCVI DVLGVISTTA 180 KEEEANKGLM AGFITAQGRE TEQDTSGFVF NGCSITGVGK AFLGRAYRGY SRVIFYNTNM 240 ADVIVAQGWD SWSYPRQVDK LTYAEVNCKG PGAKKQGRVA WEKNLSDVSY FTNVRTFLDK 300 DGWMKTLPPH PFSFDSPSSD SDENSFV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 7.0e-77 | 2 | 305 | 310 | + probable pectinesterase | ||
PLN02480 | PLN02480 | 3.0e-81 | 1 | 304 | 307 | + Probable pectinesterase | ||
PLN02176 | PLN02176 | 1.0e-84 | 1 | 307 | 309 | + putative pectinesterase | ||
PLN02432 | PLN02432 | 6.0e-86 | 3 | 287 | 285 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 5.0e-101 | 1 | 307 | 314 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI40838.1 | 0 | 2 | 308 | 44 | 341 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002263748.1 | 0 | 2 | 308 | 31 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002318946.1 | 0 | 1 | 308 | 37 | 338 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330032.1 | 0 | 2 | 308 | 38 | 323 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002512520.1 | 0 | 1 | 286 | 31 | 307 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 4e-34 | 3 | 314 | 9 | 317 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 8e-25 | 4 | 281 | 6 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 4e-19 | 13 | 203 | 18 | 216 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 4e-19 | 13 | 203 | 18 | 216 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 4e-19 | 13 | 203 | 18 | 216 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DV984237 | 300 | 12 | 305 | 0 |
EX315894 | 285 | 27 | 305 | 0 |
EX317112 | 284 | 28 | 305 | 0 |
GR458872 | 299 | 6 | 301 | 0 |
DY022435 | 279 | 1 | 276 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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