y
Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10023886m |
Family | GH28 |
Protein Properties | Length: 390 Molecular Weight: 41423.3 Isoelectric Point: 8.3873 |
Chromosome | Chromosome/Scaffold: 8 Start: 2503771 End: 2506491 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 50 | 375 | 0 |
EKICGEKGSQTLQIPIGKTFKLRPILFKGPCKSNSINFRLLGKISAPTKSEWGEKGNGRWIIFKDVKNLIVDGSGIIQGSGPTWWNDVHSNRPTSLAFRS CDNLRLKSITSINSAKKYISINSCTEVTVFNVTLIAPEHSPNTDGINLVGSSQVNLFHSTIATGDDCVAINGGCSGINITNVYCGPGHGLSVGSLGGNKA EKVEHVHVKNCTFNGTQNGARIKTYPGGSGYAKSISFKDIILINTRNPIIIDQHYGCRDHCPPTTSAVEVSDVKFIGFHGSASKGAITLSCSEVKRCNGI VLEDITIIPATKGKTLEVVCNNVDGT |
Full Sequence |
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Protein Sequence Length: 390 Download |
GLVLCFVFVF IVSVALGNGQ LQSNVVDVTS FGALGDGKTD DSKAFLEAWE KICGEKGSQT 60 LQIPIGKTFK LRPILFKGPC KSNSINFRLL GKISAPTKSE WGEKGNGRWI IFKDVKNLIV 120 DGSGIIQGSG PTWWNDVHSN RPTSLAFRSC DNLRLKSITS INSAKKYISI NSCTEVTVFN 180 VTLIAPEHSP NTDGINLVGS SQVNLFHSTI ATGDDCVAIN GGCSGINITN VYCGPGHGLS 240 VGSLGGNKAE KVEHVHVKNC TFNGTQNGAR IKTYPGGSGY AKSISFKDII LINTRNPIII 300 DQHYGCRDHC PPTTSAVEVS DVKFIGFHGS ASKGAITLSC SEVKRCNGIV LEDITIIPAT 360 KGKTLEVVCN NVDGTVQDTT PTVSCLSKP* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-70 | 2 | 372 | 394 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 1.0e-80 | 26 | 356 | 343 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 8.0e-87 | 25 | 387 | 376 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 9.0e-99 | 23 | 387 | 376 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 1.0e-108 | 19 | 386 | 373 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAA20037.1 | 0 | 27 | 386 | 15 | 368 | putative polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_195292.2 | 0 | 27 | 386 | 25 | 388 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_198105.2 | 0 | 7 | 387 | 38 | 410 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002324855.1 | 0 | 2 | 387 | 9 | 395 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 2 | 387 | 5 | 393 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ib4_B | 2e-20 | 126 | 372 | 84 | 333 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1ib4_A | 2e-20 | 126 | 372 | 84 | 333 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1ia5_A | 2e-20 | 126 | 372 | 84 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1nhc_F | 4e-20 | 59 | 335 | 24 | 296 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-20 | 59 | 335 | 24 | 296 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |