y
Basic Information | |
---|---|
Species | Thellungiella halophila |
Cazyme ID | Thhalv10023906m |
Family | GH28 |
Protein Properties | Length: 435 Molecular Weight: 47723.4 Isoelectric Point: 7.6966 |
Chromosome | Chromosome/Scaffold: 8 Start: 8285433 End: 8287522 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 76 | 400 | 0 |
STGIESTMLLVPYTFCFLVKPTTFNGPCRTRLALQIDGIIVSPDGPRSWPWNYKRQWIMIYRVNGLSIQGSGLIDGRGQKWWDLPCKPHKGINGTTQPGP CDSPVAIRIFQSSNVRIKGLNFKNSAQFHVRFDNCSDVVVDSVTIKSPASSPNTDGIHIENTHNVQIRTSVISNGDDCISIGAGCFNVDIKNITCGPSHG ISIGSLGVHNSSAWVSNITVTNSTIWNSDNGVRIKTWQGGSGSVSRIVFRNIWMVNVRNPIMIDQYYCQTKNCANQTSAVIIRDVLYANIKGSYDLRSPP MHIGCSDSFPCTNLRLENVDLFPYK |
Full Sequence |
---|
Protein Sequence Length: 435 Download |
MSFPSLFYAL LLILFSSSRV AHNINLSPSP APSPAYYDAN DNALTVFDVT SFGAIGDCTT 60 DDTSAFKMAW DVACMSTGIE STMLLVPYTF CFLVKPTTFN GPCRTRLALQ IDGIIVSPDG 120 PRSWPWNYKR QWIMIYRVNG LSIQGSGLID GRGQKWWDLP CKPHKGINGT TQPGPCDSPV 180 AIRIFQSSNV RIKGLNFKNS AQFHVRFDNC SDVVVDSVTI KSPASSPNTD GIHIENTHNV 240 QIRTSVISNG DDCISIGAGC FNVDIKNITC GPSHGISIGS LGVHNSSAWV SNITVTNSTI 300 WNSDNGVRIK TWQGGSGSVS RIVFRNIWMV NVRNPIMIDQ YYCQTKNCAN QTSAVIIRDV 360 LYANIKGSYD LRSPPMHIGC SDSFPCTNLR LENVDLFPYK GQLLNNPFCW NAYGSMQPIT 420 IPPVYCLLEA LPDC* 480 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-76 | 47 | 396 | 352 | + polygalacturonase | ||
PLN02188 | PLN02188 | 6.0e-79 | 42 | 423 | 386 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 5.0e-90 | 92 | 396 | 305 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 6.0e-99 | 43 | 396 | 357 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-126 | 46 | 423 | 380 | + Probable polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_176064.1 | 0 | 1 | 433 | 1 | 433 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002276945.1 | 0 | 5 | 430 | 12 | 451 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002318932.1 | 0 | 27 | 432 | 60 | 461 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330008.1 | 0 | 46 | 432 | 21 | 406 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002512560.1 | 0 | 46 | 432 | 74 | 459 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 6e-25 | 107 | 400 | 36 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-25 | 107 | 400 | 36 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 6e-25 | 107 | 400 | 36 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 6e-25 | 107 | 400 | 36 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 6e-25 | 107 | 400 | 36 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |