| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10023928m |
| Family | GH28 |
| Protein Properties | Length: 391 Molecular Weight: 41603.5 Isoelectric Point: 8.5965 |
| Chromosome | Chromosome/Scaffold: 8 Start: 2512110 End: 2514890 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 50 | 376 | 0 |
| EKICGEKGSQTLQIPIGKTFKLRPILFKGPCKSNTINFRLLGKIIAPTKSEWGGKGNGRWIIFKDVKNLIVDGFGIVQGSGPTWWNVVHSNRPTSLAFSG CDNLRLKSITSINSARNHISINSCTDVTVFNVTLIAPEHSPNTDGINIVGSSQVNLFHSTISTGDDCVAINGGCSGINITNVYCGPGHGLSVGSLGRNKA NEKVEHVHVKNCTFNGTQNGARIKTFPGGSGYAKSISFKDIILINTRNPIIIDQHYGCRDHCPHTTSAVEVSDVKFIGFHGSASKGAINLSCSEVKRCNG IVLEDITIIPATKGKKLEVVCNNVDGT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 391 Download |
| GLVLCFVFLF IVSVALGNGQ LQSNVVDVTS FGALGDGKTD DSKAFLEAWE KICGEKGSQT 60 LQIPIGKTFK LRPILFKGPC KSNTINFRLL GKIIAPTKSE WGGKGNGRWI IFKDVKNLIV 120 DGFGIVQGSG PTWWNVVHSN RPTSLAFSGC DNLRLKSITS INSARNHISI NSCTDVTVFN 180 VTLIAPEHSP NTDGINIVGS SQVNLFHSTI STGDDCVAIN GGCSGINITN VYCGPGHGLS 240 VGSLGRNKAN EKVEHVHVKN CTFNGTQNGA RIKTFPGGSG YAKSISFKDI ILINTRNPII 300 IDQHYGCRDH CPHTTSAVEV SDVKFIGFHG SASKGAINLS CSEVKRCNGI VLEDITIIPA 360 TKGKKLEVVC NNVDGTVQDT TPTVSCLSKP * 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 1.0e-73 | 2 | 373 | 387 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 3.0e-79 | 26 | 357 | 344 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-90 | 25 | 388 | 376 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 1.0e-100 | 23 | 388 | 372 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 3.0e-110 | 19 | 387 | 373 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABC75354.1 | 0 | 2 | 387 | 5 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| EMBL | CAA20037.1 | 0 | 27 | 387 | 15 | 368 | putative polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_195292.2 | 0 | 27 | 387 | 25 | 388 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002324855.1 | 0 | 2 | 388 | 9 | 395 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515526.1 | 0 | 2 | 388 | 5 | 393 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-19 | 120 | 357 | 119 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 1e-17 | 59 | 339 | 24 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-17 | 59 | 339 | 24 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-17 | 59 | 339 | 24 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-17 | 59 | 339 | 24 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
