Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10024612m |
Family | PL4 |
Protein Properties | Length: 667 Molecular Weight: 76877.7 Isoelectric Point: 9.6191 |
Chromosome | Chromosome/Scaffold: 1 Start: 762385 End: 766128 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 50 | 647 | 0 |
TREVIVDNGIIRVSFSSPQGLITGIKYKGIDNVLNPHLRARGYWDVTWQGENIRQGLDRIEGTKFRIITQNEEQVEISFSRRWNGGSRHIPLNVDKRYII RKNTSGIYTYGIFERLPEWPEVEMGLIRIAFKVNPDRFHYMVVADNRQREMPTDDDRDIHRGHAKALAYKEAVQLTHPHNHLFENQVDDKYQYSCEIKDN KVHGWISTKSHVGFWLISPSDEYRSGGPIKQELTSHVGPTTLTTFISEHYVGKDMETNYRAGEAWKKVLGPVFIYLNSDSTGNNPRKSLWEDAKRQTKEE VEAWPYDFVASSDFPSRQERGIVTGRLLVNDRFLTPARSAYVGLAPPGQAGSWQTNTKGYQFWTKTNETGYFTIDNVRPGAYNLYGWVPGFIGDFRYQNR VNVAAGSKISLHSVVFEPPRNGPTLWEIGVPDRTAREYYVPEPYKNTLNPLYLNHTDRFRQYGLWERYTELYPNHDLVYTIGVSNYTQDWFYAHVTRKID DSTYEPTTWQIKFHLPYVNWRGSYTLQLALASASRANLQVRFNNENSRPFFSTGNIGRDNAIARHGIHGAYRLYSINVPGRLLRTGTNTIYLRQAKAM |
Full Sequence |
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Protein Sequence Length: 667 Download |
MISQKKIASS MICLLLFLLL PIAFSEPTRI LDGRSARAPT VQQIRNRHGT REVIVDNGII 60 RVSFSSPQGL ITGIKYKGID NVLNPHLRAR GYWDVTWQGE NIRQGLDRIE GTKFRIITQN 120 EEQVEISFSR RWNGGSRHIP LNVDKRYIIR KNTSGIYTYG IFERLPEWPE VEMGLIRIAF 180 KVNPDRFHYM VVADNRQREM PTDDDRDIHR GHAKALAYKE AVQLTHPHNH LFENQVDDKY 240 QYSCEIKDNK VHGWISTKSH VGFWLISPSD EYRSGGPIKQ ELTSHVGPTT LTTFISEHYV 300 GKDMETNYRA GEAWKKVLGP VFIYLNSDST GNNPRKSLWE DAKRQTKEEV EAWPYDFVAS 360 SDFPSRQERG IVTGRLLVND RFLTPARSAY VGLAPPGQAG SWQTNTKGYQ FWTKTNETGY 420 FTIDNVRPGA YNLYGWVPGF IGDFRYQNRV NVAAGSKISL HSVVFEPPRN GPTLWEIGVP 480 DRTAREYYVP EPYKNTLNPL YLNHTDRFRQ YGLWERYTEL YPNHDLVYTI GVSNYTQDWF 540 YAHVTRKIDD STYEPTTWQI KFHLPYVNWR GSYTLQLALA SASRANLQVR FNNENSRPFF 600 STGNIGRDNA IARHGIHGAY RLYSINVPGR LLRTGTNTIY LRQAKAMGPF EGLMYDYIRL 660 EGPSRD* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.002 | 413 | 460 | 48 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 2.0e-32 | 368 | 462 | 95 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 4.0e-50 | 475 | 661 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 1.0e-72 | 51 | 330 | 286 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 1.0e-87 | 45 | 236 | 195 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAS99719.1 | 0 | 33 | 665 | 44 | 676 | At2g22620 [Arabidopsis thaliana] |
DDBJ | BAD94618.1 | 0 | 159 | 665 | 2 | 509 | LG127/30 like gene [Arabidopsis thaliana] |
EMBL | CAB37543.1 | 0 | 1 | 665 | 1 | 648 | LG127/30 like gene [Arabidopsis thaliana] |
RefSeq | NP_179847.1 | 0 | 33 | 665 | 44 | 676 | lyase [Arabidopsis thaliana] |
RefSeq | NP_195516.2 | 0 | 1 | 665 | 1 | 666 | lyase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3njx_A | 0.004 | 410 | 641 | 283 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
PDB | 1nkg_A | 0.004 | 410 | 641 | 283 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus |
PDB | 3njv_A | 0.004 | 410 | 641 | 283 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus |
PDB | 2xhn_B | 0.004 | 410 | 641 | 283 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
PDB | 2xhn_A | 0.004 | 410 | 641 | 283 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |